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CAZyme Information: MGYG000002542_02180

You are here: Home > Sequence: MGYG000002542_02180

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lentilactobacillus parafarraginis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lentilactobacillus; Lentilactobacillus parafarraginis
CAZyme ID MGYG000002542_02180
CAZy Family GH23
CAZyme Description Chromosome partition protein Smc
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1858 202254.06 10.3458
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002542 2852137 Isolate not provided not provided
Gene Location Start: 27118;  End: 32694  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002542_02180.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR01760 tape_meas_TP901 2.43e-42 304 669 1 346
phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]
pfam10145 PhageMin_Tail 1.14e-39 353 563 1 200
Phage-related minor tail protein. Members of this family are found in putative phage tail tape measure proteins.
COG5283 COG5283 2.04e-27 1 1188 1 1084
Phage-related tail protein [Mobilome: prophages, transposons].
pfam18013 Phage_lysozyme2 3.20e-21 1603 1735 1 139
Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.
PRK13914 PRK13914 4.76e-12 1402 1540 352 481
invasion associated endopeptidase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGV25903.1 0.0 1 1858 1 1858
QUX05887.1 0.0 1 1858 1 1858
QOJ84576.1 0.0 1 1858 1 1858
QEU39038.1 0.0 1 1858 1 1858
QOP51607.1 0.0 1 1858 1 1858

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3I86_A 1.97e-06 1413 1529 1 127
Crystalstructure of the P60 Domain from M. avium subspecies paratuberculosis antigen MAP1204 [Mycobacterium avium subsp. paratuberculosis],3I86_B Crystal structure of the P60 Domain from M. avium subspecies paratuberculosis antigen MAP1204 [Mycobacterium avium subsp. paratuberculosis]
3PBI_A 2.73e-06 1434 1532 100 203
ChainA, Invasion Protein [Mycobacterium tuberculosis]
3NE0_A 4.94e-06 1435 1524 111 193
Structureand functional regulation of RipA, a mycobacterial enzyme essential for daughter cell separation [Mycobacterium tuberculosis H37Rv]
3PBC_A 4.94e-06 1435 1524 111 193
ChainA, Invasion Protein [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
O64314 2.33e-15 420 584 300 463
Probable tape measure protein OS=Escherichia phage P2 OX=10679 GN=T PE=3 SV=1
E7DNB6 4.33e-14 356 644 103 374
Tape measure protein OS=Pneumococcus phage Dp-1 OX=59241 GN=TMP PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000032 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002542_02180.