Species | Lachnospira sp000436535 | |||||||||||
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Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp000436535 | |||||||||||
CAZyme ID | MGYG000002552_01328 | |||||||||||
CAZy Family | PL9 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 21292; End: 26283 Strand: - |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
PL9 | 924 | 1318 | 2.3e-123 | 0.9786666666666667 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
cd00063 | FN3 | 9.81e-06 | 476 | 543 | 17 | 92 | Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
pfam13229 | Beta_helix | 6.72e-05 | 1070 | 1216 | 9 | 128 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
smart00060 | FN3 | 1.59e-04 | 467 | 532 | 8 | 82 | Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
pfam00041 | fn3 | 3.45e-04 | 467 | 528 | 7 | 75 | Fibronectin type III domain. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
ADL35206.1 | 0.0 | 35 | 1407 | 1153 | 2520 |
ABX44216.1 | 2.06e-291 | 315 | 1325 | 184 | 1190 |
BCJ94249.1 | 4.50e-285 | 229 | 1328 | 94 | 1193 |
ACR71158.1 | 1.89e-213 | 352 | 1325 | 608 | 1644 |
AUC73536.1 | 6.51e-172 | 546 | 1315 | 85 | 852 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
1RU4_A | 1.32e-42 | 928 | 1316 | 18 | 370 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
5OLQ_A | 2.66e-16 | 924 | 1186 | 2 | 303 | Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P22751 | 5.90e-56 | 577 | 1208 | 80 | 646 | Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1 |
P0C1A6 | 2.04e-42 | 928 | 1316 | 43 | 395 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
P0C1A7 | 1.25e-41 | 928 | 1316 | 43 | 395 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.002258 | 0.992813 | 0.002779 | 0.001624 | 0.000274 | 0.000203 |
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