CAZyme Information: MGYG000002560_01855

Basic Information

• Species: Phocaeicola sp902388365
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp902388365
• CAZyme ID: MGYG000002560_01855
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
995		110928.79	9.4409

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002560	5390440	MAG	China	Asia

• Gene Location: Start: 119028; End: 122015 Strand: -

Full Sequence      

MRKNVLLFVLSCIIGCHVALAQQVPNVLQQGKADSRECKAWVDERLSGMSLKEKIGQLFI
HTVAPLNTPVNKKNIHDAIKEYKVGGLLFSGGQLSNQILLTNYAQELAEVPLFITFDGEW
GLAMRLKGTPSFPKNRVLGCIQDNELLYEYGKEVARQCKELGVQINFAPVADVDINPRNP
VINTRSFGGDPKNVAQKVIAYSRGLEDGGVLSVSKHFPGHGDTEVDSHKALPVLNFNRAR
LDSIELYPFKEAIKAGLGGVMVGHLEVPELGERPASISPQIINNLLCQELGFQGLVFTDA
LEMKGISPNQTGNICAQALMAGNDLLLAPRNLKRELDGVLAAVKSGKLSEELITEKCRKV
LTYKYALGLKDKPHIQLSGLEKRLNRPETKDLILRLQKAAVTVATNAGGVLPLNSKLEGT
VVLNIGKSPSSGLAFFNRLQNSIPLSRIVASPEAMESIKRQLLNSKRVIVVISSDDYKKY
RTMLNSLPDDLPVIYVYLMPLKSMLNMEEYWKKAAAVVLGHSGELAIQERVADVMAGKAV
ADGRLSVAVADLLKPGDGVTMAPKMLPVFKPEDYGMSSKVLKQIDEIALEGIKAKAYPGC
QILILKDGKPIYDKSFGTFTYESSRKVEEDDLYDLASLTKTTATLLAVMKLYDEGRFGLT
DRISRYVPALKGTNKERVTIEELLLHQSGIPAFWPFYKAAIDQDSYEGAFYKARPDAHHH
MQIDTRLFVIDKFEYKKDLMAKTFSGDYPLQVADSMYLHRSFRDSVVAQIGRTPLKDRSY
RYSCLNFMLLKEMVENMTKMPISVYLEKEFYGPMGMTRTSYLPLRRFKKEEIVPTVKADY
LRKGGMLQGYVHDESAAFMGGVSGNAGLFSTARDVAKVYQMLIDGGMYEGRRYLSKETCD
LFLTHTSKISRRGLGFDKPDMRNTAKSPCAAEAPKEVVGHTGFTGTCAWADPKNHLVYVF
LSNRIYPRPFDHKQLMRLNIRPRIQQVMYQAVMKR

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	105	327	2.1e-56	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	4.43e-79	49	414	1	351	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	5.03e-75	50	362	1	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	3.00e-58	565	964	24	395	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	1.58e-42	584	978	1	322	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	3.82e-42	575	975	32	374	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QEW35592.1	0.0	1	994	1	992
QQY43102.1	0.0	1	994	1	992
QQY39794.1	0.0	1	994	1	992
QUT56867.1	0.0	1	994	1	992
ABR37873.1	0.0	1	994	1	992

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	5.06e-60	49	408	11	380	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	6.29e-53	81	429	55	410	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]
3BMX_A	2.69e-50	29	423	22	457	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.10e-49	49	423	16	431	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	1.31e-49	29	423	26	461	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	1.47e-49	29	423	22	457	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.95e-45	75	418	55	430	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	1.11e-40	571	964	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	4.12e-39	571	964	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	5.80e-39	40	429	17	417	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000408	0.987694	0.011290	0.000221	0.000192	0.000179

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002560_01855.