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CAZyme Information: MGYG000002580_00747

You are here: Home > Sequence: MGYG000002580_00747

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp000436475
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp000436475
CAZyme ID MGYG000002580_00747
CAZy Family PL11
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
672 76877.45 4.8605
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002580 3016685 MAG China Asia
Gene Location Start: 103901;  End: 105919  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002580_00747.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL11 415 659 7.4e-18 0.41089108910891087

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd10318 RGL11 7.72e-07 291 638 150 527
Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADQ05930.1 3.61e-216 2 667 4 664
ACM61423.1 7.24e-216 4 670 6 667
AGC68608.1 2.28e-215 2 667 4 663
ANW98952.1 2.28e-215 2 667 4 663
ANX01481.1 2.28e-215 2 667 4 663

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000046 0.000008 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002580_00747.