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CAZyme Information: MGYG000002580_01490

You are here: Home > Sequence: MGYG000002580_01490

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnospira sp000436475
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospira; Lachnospira sp000436475
CAZyme ID MGYG000002580_01490
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1344 MGYG000002580_7|CGC1 143007.04 4.7198
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002580 3016685 MAG China Asia
Gene Location Start: 79693;  End: 83727  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002580_01490.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 886 1280 8.1e-124 0.9786666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 8.62e-06 1032 1178 9 128
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam00041 fn3 1.74e-04 426 494 4 79
Fibronectin type III domain.
smart00060 FN3 4.52e-04 426 493 5 79
Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
cd00063 FN3 0.007 440 494 19 80
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX44216.1 4.88e-305 325 1308 224 1215
BCJ94249.1 6.05e-292 192 1308 74 1213
ADL35206.1 1.42e-261 302 1287 1446 2452
ACR71158.1 4.19e-227 238 1301 525 1658
AZV35805.1 1.54e-176 501 1300 79 887

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 9.42e-41 890 1278 18 370
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 6.62e-17 913 1148 46 303
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 2.58e-59 539 1170 80 646
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 7.84e-41 890 1278 43 395
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 8.74e-40 890 1278 43 395
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.013144 0.982660 0.002381 0.001273 0.000281 0.000230

TMHMM  Annotations      download full data without filtering help

start end
12 34
1314 1336