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CAZyme Information: MGYG000002646_01437

You are here: Home > Sequence: MGYG000002646_01437

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_C; Negativicutes; Veillonellales; Veillonellaceae; Veillonella;
CAZyme ID MGYG000002646_01437
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
422 47363.02 6.7318
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002646 1639033 MAG China Asia
Gene Location Start: 1517;  End: 2785  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 142 349 1.5e-94 0.9906103286384976

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 5.11e-69 1 421 1 345
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 1.74e-60 147 349 7 185
Amb_all domain.
pfam00544 Pec_lyase_C 1.04e-42 124 349 5 210
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ARG00208.1 1.34e-257 20 422 1 403
BBM50051.1 5.85e-224 12 419 4 411
ASQ48484.1 7.90e-222 12 416 4 408
BBM47745.1 3.73e-220 12 416 4 408
BBM43035.1 6.15e-219 12 416 4 408

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BN8_A 6.52e-132 1 421 1 420
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
5AMV_A 1.85e-131 35 421 6 399
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2BSP_A 1.85e-131 1 421 1 420
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.50e-130 35 421 6 399
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]
3KRG_A 3.93e-128 35 421 6 399
ChainA, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 3.57e-131 1 421 1 420
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
Q56806 1.19e-68 42 420 36 377
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1
P72242 2.49e-68 42 420 39 379
Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1
Q59671 2.56e-68 42 420 40 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1
Q60140 7.13e-68 42 420 39 379
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.296127 0.572350 0.128326 0.001175 0.000833 0.001180

TMHMM  Annotations      download full data without filtering help

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