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CAZyme Information: MGYG000002717_02018
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; | |||||||||||
| CAZyme ID | MGYG000002717_02018 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1392; End: 2942 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 93 | 467 | 1.7e-57 | 0.9569230769230769 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 3.23e-60 | 64 | 371 | 79 | 398 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 5.13e-12 | 158 | 371 | 46 | 239 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| pfam13229 | Beta_helix | 1.58e-09 | 210 | 341 | 2 | 117 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| PLN02188 | PLN02188 | 1.72e-06 | 64 | 300 | 33 | 243 | polygalacturonase/glycoside hydrolase family protein |
| PLN03003 | PLN03003 | 3.78e-05 | 191 | 290 | 122 | 218 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QDO67502.1 | 0.0 | 11 | 503 | 1 | 493 |
| QUT42006.1 | 3.26e-287 | 11 | 503 | 1 | 493 |
| BCA48687.1 | 3.26e-287 | 11 | 503 | 1 | 493 |
| QMW86498.1 | 4.62e-287 | 11 | 503 | 1 | 493 |
| QQA07711.1 | 4.62e-287 | 11 | 503 | 1 | 493 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5OLP_A | 3.46e-39 | 73 | 437 | 50 | 432 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 3JUR_A | 2.06e-31 | 43 | 371 | 5 | 351 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 1BHE_A | 1.54e-19 | 53 | 416 | 3 | 339 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 2UVE_A | 8.34e-17 | 67 | 361 | 156 | 480 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7PZL3 | 7.43e-29 | 73 | 394 | 68 | 384 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P26509 | 1.08e-18 | 53 | 416 | 29 | 365 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 2.61e-18 | 53 | 416 | 29 | 365 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P15922 | 8.52e-18 | 67 | 394 | 151 | 512 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| P58598 | 1.87e-12 | 11 | 379 | 3 | 399 | Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as LIPO
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000064 | 0.001475 | 0.998466 | 0.000016 | 0.000004 | 0.000002 |