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CAZyme Information: MGYG000002717_02454

You are here: Home > Sequence: MGYG000002717_02454

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides;
CAZyme ID MGYG000002717_02454
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
476 53095.43 8.4177
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002717 5602088 MAG Canada North America
Gene Location Start: 4968;  End: 6398  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002717_02454.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 177 442 3.1e-33 0.7784615384615384

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 0.004 219 414 88 279
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 0.007 181 307 247 395
Polygalacturonase [Carbohydrate transport and metabolism].
COG5434 Pgu1 0.010 163 283 204 311
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDO69870.1 0.0 1 476 1 476
ALJ62060.1 1.03e-317 1 476 17 492
QUT92189.1 1.03e-317 1 476 17 492
QEW35608.1 2.46e-269 1 476 1 477
QUT34116.1 6.67e-269 1 476 1 485

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000448 0.998697 0.000314 0.000190 0.000176 0.000166

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002717_02454.