logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002768_00043

You are here: Home > Sequence: MGYG000002768_00043

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA4636 sp900764595
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; Borkfalkiaceae; UBA4636; UBA4636 sp900764595
CAZyme ID MGYG000002768_00043
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1214 MGYG000002768_3|CGC1 132853.26 4.8685
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002768 1521598 MAG United Republic of Tanzania Africa
Gene Location Start: 12540;  End: 16184  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 42 495 5.9e-93 0.9706666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 8.50e-04 130 269 8 114
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX42257.1 1.51e-76 52 491 209 599
AAG59609.1 4.73e-73 53 506 416 826
ADL51369.1 1.70e-71 53 506 840 1250
CBL17323.1 1.90e-68 34 500 385 794
ABX41986.1 1.85e-66 58 507 763 1165

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 5.20e-31 30 443 4 386
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.31e-12 43 414 5 376
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A6 3.23e-30 30 352 29 317
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 4.34e-30 30 443 29 411
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P22751 8.30e-20 44 354 392 641
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.087849 0.908871 0.001644 0.000706 0.000435 0.000449

TMHMM  Annotations      download full data without filtering help

start end
9 31