logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002774_02138

You are here: Home > Sequence: MGYG000002774_02138

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Schleiferilactobacillus harbinensis
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Schleiferilactobacillus; Schleiferilactobacillus harbinensis
CAZyme ID MGYG000002774_02138
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
395 MGYG000002774_10|CGC1 43763.39 5.444
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002774 3078759 MAG United States North America
Gene Location Start: 34376;  End: 35563  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002774_02138.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 116 374 6.2e-40 0.7323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 1.57e-08 172 386 122 318
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 8.22e-08 17 269 144 366
Polygalacturonase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QEU47473.1 3.73e-281 9 395 87 473
QFR24556.1 4.84e-277 9 395 87 473
QFR63006.1 5.03e-171 161 395 6 240
BAQ31010.1 1.74e-128 16 385 55 440
QUL53414.1 1.26e-110 19 392 93 475

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 1.77e-07 188 373 290 457
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
B0YAA4 2.92e-06 120 352 143 388
Probable exopolygalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pgxB PE=3 SV=2
Q4WBK6 2.92e-06 120 352 143 388
Probable exopolygalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pgxB PE=3 SV=2
A2QHG0 8.82e-06 146 352 184 388
Probable exopolygalacturonase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgxB PE=3 SV=1
Q27UB1 8.82e-06 146 352 184 388
Exopolygalacturonase B OS=Aspergillus niger OX=5061 GN=pgxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000080 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002774_02138.