CAZyme Information: MGYG000002818_02840

Basic Information

• Species: Tissierella sp002266425
• Lineage: Bacteria; Firmicutes_A; Clostridia; Tissierellales; Tissierellaceae; Tissierella; Tissierella sp002266425
• CAZyme ID: MGYG000002818_02840
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
658	MGYG000002818_28|CGC1	79046.75	4.5656

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002818	4155491	MAG	United States	North America

• Gene Location: Start: 20461; End: 22437 Strand: -

Full Sequence      

MRKVHVEYMKDLPINIFLANIMEYPIHWQDSIQILFVLKGTIDVGVENEIYTLNEREIEI
INVNEVYSIKSNDPDNLVLVLNIDPNFFERYYDDAKEVFFYTDSSEGKPQEDEKYHELRK
YISILLYEAISKIDDYEDKIEEYLLDMMYHLLNNFHYLFYEGEGLEEDDEQLERYHRIVK
YLSNNYMNKVSLQEIADKEFLSSQYLSYKIKDILGHGFNEYLNQIRVEESTKLLLDSDRN
ISEISEEVGFSHVRYYNKHFKLHYNCTPMQYRKKYKVSEKELEKMTKVKYFNIREAIPYL
TNYIEDYERYDYDNRIIKIDIDLNKDTIDEYRKPDIIDLGDIYLLLEEENRRILEEIQRE
IEFKYCIVNKLFSEDMDIYRDKNHKFINWTRVENILDFLRDQNLIPIIISENVEEYIIND
FINHFSNLYDEDVEKWLSMRIEDLEPYFPKKKISGMQDTISMVPYVLYNYIHLNNRVVLN
MVDEISKETILNNDTFFGGNGIFTSNYLKKPSYYAYMLLSLLGDRVIDRGEGYIVTKSEY
GYQIMLFNPVEIDEKVIYDSLPMDKIKERKISLNILNMESDFQVTKYVLDKGFGSVYDKW
LGLNRPERLDNDNWELLKEYVHPNVSFYYGKKSTVYNTVATIKPYGTVLFVLNNVLNS

Enzyme Prediction     

No EC number prediction in MGYG000002818_02840.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	456	609	7.1e-17	0.35266821345707655

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG2207	AraC	3.21e-24	172	276	19	123	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342	HTH_ARAC	2.54e-21	189	272	1	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	2.14e-18	195	274	1	81	Helix-turn-helix domain.
COG4753	YesN	5.14e-12	181	276	380	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG4977	GlxA	2.48e-11	173	273	220	320	Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QLY81077.1	2.05e-194	1	655	1	688
AUN00032.1	1.65e-189	1	655	1	688
AUN18640.1	1.65e-189	1	655	1	688
APQ75901.1	1.65e-189	1	655	1	688
QRC51944.1	2.33e-189	1	655	1	688

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6SWI_A	1.16e-09	177	279	9	112	TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q936F1	2.22e-18	30	628	21	715	Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2
Q6GKK1	2.93e-18	30	628	21	715	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q8NYT6	5.11e-18	30	628	21	715	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21	5.11e-18	30	628	21	715	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q7A882	5.11e-18	30	628	21	715	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000042	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002818_02840.