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CAZyme Information: MGYG000002825_02549

You are here: Home > Sequence: MGYG000002825_02549

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Klebsiella_A indica
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella_A; Klebsiella_A indica
CAZyme ID MGYG000002825_02549
CAZy Family PL9
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
723 MGYG000002825_9|CGC5 78346.61 6.0428
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002825 5145656 MAG Singapore Asia
Gene Location Start: 215715;  End: 217886  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 378 721 4.1e-108 0.9706666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 1.01e-07 457 626 19 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 5.91e-05 462 630 1 137
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam14592 Chondroitinas_B 1.61e-04 398 555 3 143
Chondroitinase B. This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAS43604.1 0.0 1 723 1 723
QLT67346.1 0.0 1 723 1 723
QQQ24706.1 0.0 1 723 1 723
AWT18556.1 0.0 1 723 1 723
VTS65471.1 0.0 1 723 1 723

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 1.09e-32 383 657 18 316
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.72e-13 379 662 2 357
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 1.07e-290 28 679 34 688
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A6 4.95e-32 383 657 43 341
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 9.05e-32 383 657 43 341
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000343 0.998852 0.000251 0.000178 0.000168 0.000150

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002825_02549.