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CAZyme Information: MGYG000002836_00343

You are here: Home > Sequence: MGYG000002836_00343

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Anaerocolumna aminovalerica
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Anaerocolumna; Anaerocolumna aminovalerica
CAZyme ID MGYG000002836_00343
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
521 MGYG000002836_2|CGC2 58566.24 4.9457
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002836 4582914 MAG United States North America
Gene Location Start: 74954;  End: 76519  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002836_00343.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 228 499 6.2e-42 0.7630769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 4.47e-10 243 341 201 315
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 6.45e-09 252 422 72 238
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 1.08e-06 232 400 140 335
Probable polygalacturonase
PLN03010 PLN03010 7.60e-05 245 465 143 340
polygalacturonase
PLN03003 PLN03003 0.010 245 438 117 298
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCK00431.1 5.42e-300 1 521 1 520
ABX43664.1 6.20e-247 16 521 13 518
ACI19833.1 2.88e-151 6 512 2 476
ACK41503.1 5.76e-151 16 511 6 475
QTE67472.1 2.92e-129 48 511 33 478

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 3.79e-06 226 388 153 331
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999763 0.000220 0.000014 0.000001 0.000001 0.000038

TMHMM  Annotations      download full data without filtering help

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