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CAZyme Information: MGYG000002871_00864
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Collinsella sp900555815 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900555815 | |||||||||||
| CAZyme ID | MGYG000002871_00864 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3537; End: 4163 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 1 | 150 | 7.8e-25 | 0.40307692307692305 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 2.49e-31 | 2 | 155 | 333 | 484 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02793 | PLN02793 | 6.09e-07 | 11 | 82 | 271 | 342 | Probable polygalacturonase |
| PLN02218 | PLN02218 | 1.02e-06 | 11 | 88 | 286 | 363 | polygalacturonase ADPG |
| PLN03010 | PLN03010 | 2.32e-05 | 11 | 109 | 251 | 348 | polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 1.38e-04 | 2 | 85 | 172 | 255 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIA34431.1 | 2.11e-110 | 1 | 161 | 330 | 490 |
| ATP54717.1 | 3.09e-107 | 1 | 161 | 330 | 490 |
| QUC03565.1 | 1.28e-82 | 1 | 160 | 329 | 488 |
| QOL31033.1 | 2.01e-77 | 1 | 161 | 328 | 488 |
| QOL34309.1 | 2.01e-77 | 1 | 161 | 328 | 488 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P27644 | 2.49e-27 | 3 | 166 | 121 | 284 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
| P15922 | 5.85e-06 | 2 | 93 | 419 | 507 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000044 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |