CAZyme Information: MGYG000002878_02092

Basic Information

• Species: RC9 sp900546395
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp900546395
• CAZyme ID: MGYG000002878_02092
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
503		56380.39	5.1592

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002878	2590775	MAG	United States	North America

• Gene Location: Start: 3984; End: 5495 Strand: +

Full Sequence      

MKHFLKSLFILSFLASVSCAGQNVIYLEDYIDGNQDAMPAIRSALEDCRKHKAVKLVLPE
GTLKITPDKAYEKYQFISNNDESLKRIAFNLEGMKDFTVEGQNTLLLFTGFISPFSLEGC
EDVTIKNLSIDFTRTFHSEGIIEKTGEDWLDIRFPGDYNCNIINGCLYFTDKYGITYPFS
NLLEFDSVKREPAFLASDYWLSKQTIEAEKLDDNLVRIFKKGITGAVGNTMVFGAAARYN
PAFFVSDSENISISNVNLWHCGGMGVIAQRSSNIWLDKLEIVPSPEKKRMISITADATHF
VNCSGYIKMTGCKFCNQKDDATNIHGLYMAIDELVGRDKAILKWRNSGQYGVDFVKPGMK
VEIVDNKTVSTYCYATIKSVERLNKVTTIVSFDAPLPEGVRKDMVVAADEEYPEVLIKGC
YMSGNRARGLLLGSRGKMIIEDNYFHIPGAAILFEGDGNFWYEQSGVRDVEIKNNVFENC
NYGYPTWGAACIAVGSRIPDLES

Enzyme Prediction     

No EC number prediction in MGYG000002878_02092.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	32	501	9.6e-127	0.8521897810218978

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
smart00561	MBT	0.003	353	394	26	64	Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUR44558.1	4.08e-266	24	500	25	504
ALJ40196.1	4.08e-266	24	500	25	504
BBL12596.1	7.58e-237	20	503	23	509
BBL09802.1	7.58e-237	20	503	23	509
BBL01922.1	2.59e-235	20	503	23	509

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	1.26e-116	32	500	38	523	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	7.05e-116	32	500	38	523	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
B1KD83	7.71e-89	32	482	43	496	Alpha-1,3-galactosidase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) OX=392500 GN=glaA PE=3 SV=1
Q89ZX0	6.76e-71	18	502	21	514	Alpha-1,3-galactosidase B OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=glaB PE=3 SV=1
Q5L7M8	1.90e-61	3	502	6	513	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaA PE=3 SV=1
Q64MU6	1.38e-60	3	502	6	513	Alpha-1,3-galactosidase A OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaA PE=3 SV=1
A6L2M8	2.78e-47	14	502	13	519	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB2 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.008658	0.598094	0.392114	0.000478	0.000307	0.000337

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002878_02092.