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CAZyme Information: MGYG000002881_00530

You are here: Home > Sequence: MGYG000002881_00530

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000002881_00530
CAZy Family CBM79
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
691 74876.43 3.9213
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002881 1270591 MAG United States North America
Gene Location Start: 339;  End: 2414  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002881_00530.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM79 449 563 1.8e-22 0.9545454545454546

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam18522 DUF5620 1.34e-20 265 423 3 119
Domain of unknown function (DUF5620). This is a domain of unknown function predicted to be a carbohydrate binding module.
pfam18522 DUF5620 3.12e-16 449 566 1 119
Domain of unknown function (DUF5620). This is a domain of unknown function predicted to be a carbohydrate binding module.
cd14256 Dockerin_I 2.98e-05 616 672 2 55
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
EWM54821.1 3.05e-139 6 681 5 649
CBL17555.1 3.66e-70 88 682 85 611
CCZ83178.1 8.04e-46 68 567 86 672
CDE11886.1 1.90e-16 228 576 67 348
ERJ92483.1 7.87e-16 228 576 90 372

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5M2S_B 1.06e-14 611 677 24 98
R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1]
5M2O_B 1.28e-12 616 678 29 91
R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1]
5N5P_B 6.08e-06 611 653 4 46
Crystalstructure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1],5N5P_D Crystal structure of Ruminococcus flavefaciens' type III complex containing the fifth cohesin from scaffoldin B and the dockerin from scaffoldin A [Ruminococcus flavefaciens FD-1]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q53317 9.55e-11 611 677 434 508
Xylanase/beta-glucanase OS=Ruminococcus flavefaciens OX=1265 GN=xynD PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001760 0.997147 0.000226 0.000366 0.000241 0.000201

TMHMM  Annotations      download full data without filtering help

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