CAZyme Information: MGYG000002898_01420

Basic Information

• Species: Haemophilus_D pittmaniae
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Pasteurellaceae; Haemophilus_D; Haemophilus_D pittmaniae
• CAZyme ID: MGYG000002898_01420
• CAZy Family: GT9
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
342		39088.42	9.2927

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002898	2077686	MAG	United States	North America

• Gene Location: Start: 44507; End: 45535 Strand: +

Full Sequence      

MSLLKKAIVKLVGSRAKISSINFAEIQSVLIKPIGDAIGDSIAHSAHIKQLKAANPNIKI
GIFVSSRSRLIYELSGLVDVFFEDKAITYFKQRKRWDLYLDFMPSYTTRSLLLEKILSPK
FIFTFYKREKKYYSIHSINNYNHHADITDKTHVTDYLMDSLLGQYLNREESCYPKLLTNL
PEVSHLWQKNKIKILIAPEGSTRRIPAKEIAAFLDNLPENLKERCDLLVSISDAEKNNYK
NMPDIRLLPKVSLAEYIGLINKADFVLSVDGGTVHIACACRRPLLAFYADNVRNLAIWSP
KCEPEIPCKVIKSREPGDNNHTENFDMKEASIWLIKQIDNLA

Enzyme Prediction     

No EC number prediction in MGYG000002898_01420.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT9	93	298	1.1e-17	0.8222222222222222

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG0859	RfaF	1.62e-16	30	337	6	324	ADP-heptose:LPS heptosyltransferase [Cell wall/membrane/envelope biogenesis].
cd03789	GT9_LPS_heptosyltransferase	5.28e-10	36	321	8	262	lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
pfam01075	Glyco_transf_9	8.25e-09	247	317	168	245	Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.
TIGR02195	heptsyl_trn_II	1.51e-04	247	304	236	286	lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK10964	PRK10964	0.007	243	288	234	279	lipopolysaccharide heptosyltransferase RfaC.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SNV62982.1	6.30e-250	1	342	1	342
QTO72652.1	2.77e-102	5	342	5	348
APB78695.1	2.77e-102	5	342	5	348
ACX35575.1	2.77e-102	5	342	5	348
VEJ48034.1	2.77e-102	5	342	5	348

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000049	0.000003	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002898_01420.