CAZyme Information: MGYG000002904_03028

Basic Information

• Species: Phytobacter diazotrophicus
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter diazotrophicus
• CAZyme ID: MGYG000002904_03028
• CAZy Family: GT107
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
680	MGYG000002904_24|CGC1	76415.87	9.3201

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002904	5266198	MAG	United States	North America

• Gene Location: Start: 68908; End: 70950 Strand: +

Full Sequence      

MERTRNILGIYSGGIWRIPHLDSFLPGETVRLSPYKTIPEQVNAIAVWGHRPSAQKPVAL
AQSVGLPVIRLEDGFIRSLGLGVQGCPPLSIVVDHLGIYYDASVPSSLEYLVKDNDGNKP
LADEAQAMMRAIVDNDLSKYNQAPPFVAPDIMPEAVLVIDQTFGDMSVTKGNAGPESFQQ
MLETAKQENPNAEVWVKVHPDVLCGKKTGYFANLKPDGRVRVFAEDVSPQSLLRHMQKVY
VVTSQYGFEALLAGKPVVCFGQPWYAGWGLTDDRHPKASELAARRQPTTLSNLFTAAYLR
YCRYRHPVSGKPATLACVIDWLVLQRNHNLARRGTLWAPGLSLWKTAILRPFLKTTENRV
RFAKQCRQASALIVWGTRGEKKWQAQADAQRIPLWRMEDGFIRSSGLGSDLLAPLSLVLD
KIGIYYDASRPSDLENLLNASSLSEHQRERAQALQQQLVRNKVSKYNLGQEWHLPPEATG
KKVILVPGQVEDDASILTGARSVNTNRDLLRTVRERNPDAFVVFKPHPDVLVGNRKGQVV
AEDIARWADCQALDADIIQCIQLADELHTMTSLSGFEALMHGKRVFCYGLPFYAGWGLTQ
DEHHIPRRARQLSLTDLVWQTLITYPTYIHPERLEPMQAEDAVMWLSTAPRGEMKITKKN
IGRLARQYRKLLMFYKVRFG

Enzyme Prediction     

No EC number prediction in MGYG000002904_03028.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT107	283	672	2.5e-148	0.7443609022556391
GT107	15	327	1.6e-103	0.5921052631578947

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3563	KpsC	0.0	10	677	6	669	Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis].
cd16439	beta_Kdo_transferase_KpsC_2	5.69e-158	370	628	1	259	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16440	beta_Kdo_transferase_KpsC_1	3.10e-145	45	307	1	262	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16437	beta_Kdo_transferase_KpsC	6.68e-121	372	628	1	256	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16437	beta_Kdo_transferase_KpsC	4.45e-113	45	304	1	256	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QOV71379.1	0.0	7	680	1	674
QJF19767.1	0.0	7	680	1	674
AUU92844.1	0.0	7	680	1	674
AUV10486.1	0.0	7	680	1	674
QIH61773.1	0.0	25	680	1	656

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6MGC_A	5.81e-162	8	355	3	351	Escherichiacoli KpsC, N-terminal domain [Escherichia coli APEC O1]
6MGB_A	5.21e-82	8	323	11	322	Thermosulfurimonasdismutans KpsC, beta Kdo 2,4 transferase [Thermosulfurimonas dismutans]
6MGD_A	7.66e-73	342	646	10	318	Thermosulfurimonasdismutans KpsC, beta Kdo 2,7 transferase [Thermosulfurimonas dismutans],6MGD_B Thermosulfurimonas dismutans KpsC, beta Kdo 2,7 transferase [Thermosulfurimonas dismutans]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P42217	0.0	7	680	1	675	Capsule polysaccharide export protein KpsC OS=Escherichia coli OX=562 GN=kpsC PE=4 SV=1
Q05013	5.16e-210	2	676	16	701	Capsule polysaccharide modification protein LipA OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=lipA PE=4 SV=2
P57037	2.93e-209	2	676	16	701	Capsule polysaccharide modification protein LipA OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=lipA PE=4 SV=1
P31858	7.79e-60	344	652	96	405	Lipopolysaccharide-processing protein LpsZ OS=Rhizobium meliloti OX=382 GN=lpsZ PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000055	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002904_03028.