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CAZyme Information: MGYG000002904_04551
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytobacter diazotrophicus | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter diazotrophicus | |||||||||||
| CAZyme ID | MGYG000002904_04551 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | Endo-polygalacturonase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 6187; End: 7431 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 78 | 393 | 2.4e-80 | 0.8861538461538462 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00295 | Glyco_hydro_28 | 1.24e-58 | 80 | 369 | 15 | 282 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| COG5434 | Pgu1 | 3.18e-47 | 48 | 340 | 94 | 407 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02793 | PLN02793 | 1.23e-31 | 48 | 341 | 64 | 340 | Probable polygalacturonase |
| PLN02218 | PLN02218 | 3.57e-31 | 146 | 341 | 159 | 355 | polygalacturonase ADPG |
| PLN02188 | PLN02188 | 4.72e-31 | 46 | 343 | 46 | 322 | polygalacturonase/glycoside hydrolase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QIH66065.1 | 5.88e-296 | 1 | 414 | 1 | 414 |
| QJF15511.1 | 5.88e-296 | 1 | 414 | 1 | 414 |
| AUU88343.1 | 9.75e-295 | 1 | 414 | 1 | 414 |
| AUV06366.1 | 9.75e-295 | 1 | 414 | 1 | 414 |
| QOV68755.1 | 2.56e-290 | 1 | 414 | 1 | 414 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BHE_A | 3.35e-124 | 28 | 392 | 2 | 365 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 7E56_A | 4.74e-18 | 146 | 342 | 71 | 266 | ChainA, Endo-polygalacturonase [Evansstolkia leycettana] |
| 6KVE_A | 5.16e-18 | 146 | 342 | 79 | 274 | ChainA, Endo-polygalacturonase [Evansstolkia leycettana] |
| 6KVH_A | 5.16e-18 | 146 | 342 | 79 | 274 | ChainA, endo-polygalacturonase [Evansstolkia leycettana] |
| 1HG8_A | 7.06e-15 | 84 | 331 | 2 | 267 | Endopolygalacturonasefrom the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P26509 | 3.33e-125 | 16 | 392 | 16 | 391 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 7.63e-124 | 16 | 402 | 16 | 401 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| P58598 | 3.11e-81 | 56 | 386 | 78 | 454 | Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1 |
| P20041 | 5.85e-81 | 46 | 386 | 67 | 452 | Polygalacturonase OS=Ralstonia solanacearum OX=305 GN=pglA PE=1 SV=1 |
| Q7M1E7 | 3.56e-30 | 48 | 341 | 70 | 346 | Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000398 | 0.998714 | 0.000334 | 0.000187 | 0.000166 | 0.000156 |