dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002955_00500

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Basic Information help

Species

Desulfovibrio sp900319575

Lineage

Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio sp900319575

CAZyme ID

MGYG000002955_00500

CAZy Family

GT4

CAZyme Description

Vitamin B12 import ATP-binding protein BtuD

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
667	MGYG000002955_11\|CGC1	72683.03	8.4057

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002955	2308820	MAG	United States	North America

Gene Location

Start: 22498; End: 24501 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002955_00500.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT4	477	631	1.5e-27	0.925

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd03255	ABC_MJ0796_LolCDE_FtsE	3.19e-90	5	219	1	218	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
COG1136	LolD	8.35e-90	4	217	1	218	ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis].
NF038007	ABC_ATP_DarD	3.73e-62	20	219	20	218	darobactin export ABC transporter ATP-binding protein.
COG1126	GlnQ	2.08e-58	3	222	1	217	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].
cd03258	ABC_MetN_methionine_transporter	4.40e-58	4	220	1	220	ATP-binding cassette domain of methionine transporter. MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AMD89422.1	3.44e-212	1	653	1	648
SFV72712.1	1.29e-210	1	654	1	644
VZH35395.1	1.28e-204	1	634	1	628
ATD81516.1	1.43e-200	1	631	1	623
SPD34221.1	1.43e-200	1	631	1	623

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5XU1_A	2.65e-46	1	219	13	233	Structureof a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6],5XU1_B Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6]
5LJ9_A	5.98e-44	1	224	1	226	Structureof the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_B Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_C Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJA_A Structure of the E. coli MacB ABC domain (P6122) [Escherichia coli K-12]
1L2T_A	9.25e-44	21	217	21	221	ChainA, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii],1L2T_B Chain B, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii]
3TIF_A	1.22e-42	21	217	21	221	Dimericstructure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661],3TIF_B Dimeric structure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661]
1F3O_A	5.70e-41	21	217	21	221	Crystalstructure of MJ0796 ATP-binding cassette [Methanocaldococcus jannaschii]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q9WYI7	2.23e-50	1	217	1	219	Uncharacterized ABC transporter ATP-binding protein TM_0352 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0352 PE=3 SV=1
O34979	1.90e-49	19	220	19	219	Uncharacterized ABC transporter ATP-binding protein YvrO OS=Bacillus subtilis (strain 168) OX=224308 GN=yvrO PE=3 SV=2
Q9A6Z7	6.83e-49	3	223	4	227	Lipoprotein-releasing system ATP-binding protein LolD 2 OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=lolD2 PE=3 SV=1
O31711	2.68e-48	20	220	20	219	Uncharacterized ABC transporter ATP-binding protein YknY OS=Bacillus subtilis (strain 168) OX=224308 GN=yknY PE=1 SV=1
A1K323	7.85e-46	20	220	38	237	Macrolide export ATP-binding/permease protein MacB OS=Azoarcus sp. (strain BH72) OX=418699 GN=macB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000084	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000002955_00500.