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CAZyme Information: MGYG000002960_01380

You are here: Home > Sequence: MGYG000002960_01380

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900555035
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900555035
CAZyme ID MGYG000002960_01380
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
464 MGYG000002960_39|CGC1 52842.53 9.4795
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002960 3004760 MAG China Asia
Gene Location Start: 7843;  End: 9237  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002960_01380.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd00118 LysM 7.23e-09 30 75 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 3.16e-08 30 75 1 44
Lysin motif.
pfam01476 LysM 1.34e-07 31 76 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG1388 LysM 0.001 30 76 68 111
LysM repeat [Cell wall/membrane/envelope biogenesis].
cd06268 PBP1_ABC_transporter_LIVBP-like 0.003 118 401 1 281
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUB46898.1 3.15e-182 6 464 7 451
ALO48876.1 7.69e-175 1 464 1 448
AXV48299.1 8.91e-162 1 464 1 460
QUB88660.1 8.91e-162 1 464 1 460
QUB86322.1 1.92e-161 1 464 1 462

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000343 0.998979 0.000207 0.000153 0.000145 0.000131

TMHMM  Annotations      download full data without filtering help

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