CAZyme Information: MGYG000002964_01643

Basic Information

• Species: Oscillibacter ruminantium
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; Oscillibacter; Oscillibacter ruminantium
• CAZyme ID: MGYG000002964_01643
• CAZy Family: GH0
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
413	MGYG000002964_158|CGC1	46037.89	4.5857

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002964	2326356	MAG	United States	North America

• Gene Location: Start: 3844; End: 5085 Strand: -

Full Sequence      

MNQYPDKGKLQVSVSAKDNLYPISEATVRISDISTGEVVDEFPTDSSGQTPVFELPAPPE
EYSVTPGSEEKPYASYNMTILAKDFETLHIGGVQILPQNIALQNASLKTATKNGFNVKNI
LIAPHTLWGDFPPKIPEDDVKPLPESNGLVVLDQPVIPEFVIVHQGPPSDTYAENVWVTF
KDYVKNVACCEIYSTWETETLKANILAIISFTLNRVYTEWYRGKGYNFTITNSTAYDQAF
QYGRNIFEMVSVLVDDLFTTYITRENINQPLFTQYCDGKRTQCAGLSQWGSQSLGEQGYA
AIDILKHYYGPEIYLAAAEKVAGVPRSYDNNVLQLGSTGSAVLTIQNQLNKIATHYPAIP
KTKSNSDFDSTTQEAVMKFQEIFHLPVTGAVDFKTWYEISNIFVGISKLAELH

Enzyme Prediction     

No EC number prediction in MGYG000002964_01643.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam01471	PG_binding_1	6.02e-09	338	396	1	54	Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
TIGR02669	SpoIID_LytB	1.10e-08	161	309	84	260	SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
pfam08486	SpoIID	2.48e-04	178	241	11	72	Stage II sporulation protein. This domain is found in the stage II sporulation protein SpoIID. SpoIID is necessary for membrane migration as well as for some of the earlier steps in engulfment during bacterial endospore formation. The domain is also found in amidase enhancer proteins. Amidases, like SpoIID, are cell wall hydrolases.
COG3409	PGRP	0.003	332	396	38	99	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG2385	SpoIID	0.005	285	309	361	385	Peptidoglycan hydrolase (amidase) enhancer domain [Cell wall/membrane/envelope biogenesis].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AUO18419.1	7.27e-187	4	410	5	410
QOX64963.1	2.37e-170	6	412	12	418
QJU14725.1	7.92e-145	4	412	13	420
QQQ92685.1	7.92e-145	4	412	13	420
ASU27931.1	7.92e-145	4	412	13	420

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000032	0.000016	0.000002	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002964_01643.