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CAZyme Information: MGYG000002977_00892

You are here: Home > Sequence: MGYG000002977_00892

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bifidobacterium vaginale_F
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium vaginale_F
CAZyme ID MGYG000002977_00892
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
328 MGYG000002977_52|CGC1 35719.44 9.0476
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002977 1471933 MAG United States North America
Gene Location Start: 5918;  End: 6904  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002977_00892.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07501 G5 6.58e-17 139 211 2 74
G5 domain. This domain is found in a wide range of extracellular proteins. It is found tandemly repeated in up to 8 copies. It is found in the N-terminus of peptidases belonging to the M26 family which cleave human IgA. The domain is also found in proteins involved in metabolism of bacterial cell walls suggesting this domain may have an adhesive function.
COG3583 YabE 1.04e-16 78 221 149 293
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains [Function unknown].
pfam03990 DUF348 1.04e-07 81 122 1 41
Domain of unknown function (DUF348). This domain normally occurs as tandem repeats; however it is found as a single copy in the S. cerevisiae DNA-binding nuclear protein YCR593. This protein is involved in sporulation part of the SET3C complex, which is required to repress early/middle sporulation genes during meiosis. The bacterial proteins are likely to be involved in a cell wall function as they are found in conjunction with the pfam07501 domain, which is involved in various cell surface processes.
cd13925 RPF 0.004 256 284 5 34
core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
APW18388.1 4.10e-163 1 328 1 328
ADB14142.1 4.76e-162 1 328 1 328
AYZ21521.1 9.47e-147 1 328 1 334
VEH16994.1 1.34e-146 1 328 1 334
BAQ32923.1 1.34e-146 1 328 1 334

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000021 0.000013 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

start end
21 43