dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002982_00214

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Basic Information help

Species

Streptococcus rubneri

Lineage

Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus rubneri

CAZyme ID

MGYG000002982_00214

CAZy Family

GH25

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
961		104840.92	7.3589

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002982	1039311	MAG	United States	North America

Gene Location

Start: 6510; End: 9395 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002982_00214.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH25	139	325	4.9e-41	0.9717514124293786

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06522	GH25_AtlA-like	1.94e-81	136	339	1	192	AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
pfam01183	Glyco_hydro_25	1.79e-37	139	323	1	174	Glycosyl hydrolases family 25.
pfam08481	GBS_Bsp-like	4.94e-32	585	672	1	88	GBS Bsp-like repeat. This domain is found as a repeat in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology.
pfam08481	GBS_Bsp-like	1.11e-30	364	452	1	89	GBS Bsp-like repeat. This domain is found as a repeat in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology.
pfam08481	GBS_Bsp-like	4.90e-27	482	570	1	89	GBS Bsp-like repeat. This domain is found as a repeat in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology.

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
QEW10542.1	1	961	1	1156
QUB38816.1	1	961	1	1155
AGY39024.1	1	961	1	1157
ARC22445.1	1	961	1	1183
ARC34341.1	1	961	1	1183

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3HMC_A	5.31e-07	139	264	8	124	Endolysinfrom Bacillus anthracis [Bacillus anthracis]
2IXV_A	4.53e-06	138	322	8	178	ChainA, LYSOZYME [Streptococcus phage Cp1],2J8F_A Chain A, LYSOZYME [Streptococcus phage Cp1],2J8G_A Chain A, LYSOZYME [Streptococcus phage Cp1]
1H09_A	7.93e-06	138	322	7	177	ChainA, LYSOZYME [Streptococcus phage Cp1]
2IXU_A	7.96e-06	138	322	8	178	ChainA, LYSOZYME [Streptococcus phage Cp1]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P19385	2.09e-08	138	322	8	178	Lysozyme OS=Streptococcus phage Cp-7 OX=10748 GN=CPL7 PE=1 SV=2
P19386	1.10e-06	138	322	8	178	Lysozyme OS=Streptococcus phage Cp-9 OX=10749 GN=CPL9 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000266	0.998950	0.000238	0.000196	0.000174	0.000144

TMHMM Annotations help

There is no transmembrane helices in MGYG000002982_00214.