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CAZyme Information: MGYG000003005_00959

You are here: Home > Sequence: MGYG000003005_00959

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000003005_00959
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
953 MGYG000003005_55|CGC1 103973.53 4.8677
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003005 2620760 MAG United States North America
Gene Location Start: 104;  End: 2965  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.14 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 267 448 3.3e-55 0.8923076923076924
CBM13 544 657 1.4e-18 0.5691489361702128

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.65e-41 190 520 33 341
Pectate lyase [Carbohydrate transport and metabolism].
pfam14200 RicinB_lectin_2 6.88e-20 560 640 12 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 3.12e-18 601 689 5 89
Ricin-type beta-trefoil lectin domain-like.
pfam00544 Pec_lyase_C 6.90e-18 265 448 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656 Amb_all 9.54e-18 263 455 10 190
Amb_all domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 39 944 34 910
CDM68184.1 2.18e-118 36 618 24 582
AKQ74328.1 1.75e-90 39 521 29 479
ARC69127.1 1.77e-89 39 521 29 479
QNT99263.1 9.28e-89 39 521 29 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 3.78e-11 203 445 14 226
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 3.28e-57 190 522 35 338
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 6.94e-55 190 522 35 338
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 3.18e-48 190 521 10 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 4.93e-42 187 523 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
B1L969 1.87e-11 203 445 39 251
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000348 0.998736 0.000393 0.000185 0.000164 0.000139

TMHMM  Annotations      download full data without filtering help

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