Species | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; | |||||||||||
CAZyme ID | MGYG000003005_01166 | |||||||||||
CAZy Family | PL1 | |||||||||||
CAZyme Description | hypothetical protein | |||||||||||
CAZyme Property |
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Genome Property |
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Gene Location | Start: 2776; End: 6522 Strand: + |
Family | Start | End | Evalue | family coverage |
---|---|---|---|---|
PL9 | 593 | 998 | 1.1e-123 | 0.976 |
PL1 | 230 | 400 | 2.8e-45 | 0.8217821782178217 |
CBM77 | 1052 | 1154 | 8e-42 | 0.9902912621359223 |
Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
---|---|---|---|---|---|---|---|
COG3866 | PelB | 2.72e-49 | 170 | 512 | 41 | 344 | Pectate lyase [Carbohydrate transport and metabolism]. |
pfam18283 | CBM77 | 9.77e-43 | 1050 | 1156 | 1 | 108 | Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan. |
smart00656 | Amb_all | 1.59e-31 | 230 | 402 | 13 | 190 | Amb_all domain. |
pfam00544 | Pec_lyase_C | 5.03e-22 | 236 | 398 | 38 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
cd14256 | Dockerin_I | 1.02e-04 | 1172 | 1236 | 2 | 54 | Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex. |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
---|---|---|---|---|---|
AOR96287.1 | 2.65e-258 | 49 | 1004 | 54 | 1084 |
ADU23076.1 | 1.61e-257 | 1 | 554 | 1 | 556 |
ABX41986.1 | 1.04e-256 | 40 | 1004 | 29 | 1154 |
QMW93302.1 | 1.29e-255 | 49 | 1004 | 54 | 1084 |
BBK78741.1 | 1.29e-255 | 49 | 1004 | 54 | 1084 |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
5FU5_A | 5.50e-44 | 1046 | 1159 | 2 | 114 | Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens] |
1RU4_A | 4.95e-35 | 594 | 878 | 16 | 294 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
5M2S_B | 4.20e-25 | 1171 | 1247 | 28 | 103 | R.flavefaciens' third ScaB cohesin in complex with a group 1 dockerin [Ruminococcus flavefaciens FD-1] |
1AIR_A | 7.39e-25 | 167 | 505 | 2 | 339 | ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi] |
2EWE_A | 1.81e-24 | 167 | 505 | 2 | 339 | ChainA, Pectate lyase C [Dickeya chrysanthemi] |
Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
---|---|---|---|---|---|---|
P0C1A6 | 5.33e-35 | 594 | 925 | 41 | 369 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
P0C1A7 | 4.34e-34 | 594 | 878 | 41 | 319 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
P22751 | 1.02e-31 | 595 | 876 | 391 | 639 | Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1 |
P0C1C1 | 3.15e-24 | 145 | 505 | 34 | 360 | Pectate lyase 2 OS=Pectobacterium carotovorum OX=554 GN=pel2 PE=3 SV=1 |
P11073 | 3.20e-24 | 163 | 505 | 20 | 361 | Pectate lyase C OS=Dickeya chrysanthemi OX=556 GN=pelC PE=1 SV=1 |
Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
---|---|---|---|---|---|
0.001837 | 0.534030 | 0.462835 | 0.000761 | 0.000322 | 0.000206 |
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