logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003005_01903

You are here: Home > Sequence: MGYG000003005_01903

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus;
CAZyme ID MGYG000003005_01903
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
953 MGYG000003005_182|CGC1 104967.07 4.8121
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003005 2620760 MAG United States North America
Gene Location Start: 666;  End: 3527  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.14 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 211 433 1.1e-34 0.9257425742574258
CBM13 557 702 1.8e-23 0.7021276595744681
CBM13 711 865 5.4e-17 0.75

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 8.03e-29 167 513 30 343
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 1.04e-19 236 433 17 188
Amb_all domain.
pfam14200 RicinB_lectin_2 3.72e-16 642 741 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 4.70e-16 558 636 15 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 4.60e-15 596 685 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17651.1 1.91e-181 33 948 34 893
CDM70399.1 9.74e-166 33 700 31 696
AUO18238.1 5.34e-146 18 700 19 707
CBL16867.1 1.02e-140 8 947 10 912
ASR46637.1 1.14e-82 33 530 35 536

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3KRG_A 3.27e-13 267 482 149 374
ChainA, Pectate lyase [Bacillus subtilis]
5AMV_A 3.27e-13 267 482 149 374
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
1BN8_A 3.70e-13 267 482 170 395
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
2BSP_A 8.66e-13 267 482 170 395
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.81e-12 267 482 149 374
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 3.99e-22 169 511 34 336
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 5.82e-21 169 511 34 336
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P24112 1.22e-16 167 492 7 291
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
P27027 3.09e-15 186 511 18 303
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P39116 2.03e-12 267 482 170 395
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.003531 0.994820 0.000974 0.000251 0.000204 0.000187

TMHMM  Annotations      download full data without filtering help

start end
7 24