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CAZyme Information: MGYG000003042_02315
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Gemmiger sp900545545 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Gemmiger; Gemmiger sp900545545 | |||||||||||
| CAZyme ID | MGYG000003042_02315 | |||||||||||
| CAZy Family | GH39 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaS | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 890; End: 3301 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH39 | 315 | 749 | 1.5e-48 | 0.974477958236659 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2207 | AraC | 4.00e-25 | 148 | 266 | 4 | 122 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| pfam01229 | Glyco_hydro_39 | 1.83e-22 | 347 | 800 | 44 | 487 | Glycosyl hydrolases family 39. |
| smart00342 | HTH_ARAC | 6.36e-21 | 180 | 263 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| pfam12833 | HTH_18 | 7.35e-21 | 186 | 265 | 1 | 81 | Helix-turn-helix domain. |
| COG4977 | GlxA | 1.07e-16 | 142 | 265 | 195 | 321 | Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QGH26007.1 | 2.01e-234 | 1 | 801 | 1 | 799 |
| QGH21968.1 | 2.01e-234 | 1 | 801 | 1 | 799 |
| QQQ92191.1 | 2.92e-217 | 21 | 801 | 17 | 797 |
| QJU15301.1 | 2.92e-217 | 21 | 801 | 17 | 797 |
| ASU27451.1 | 3.33e-217 | 21 | 801 | 21 | 801 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6UQJ_A | 4.55e-25 | 337 | 671 | 47 | 380 | Crystalstructure of the GH39 enzyme from Xanthomonas axonopodis pv. citri [Xanthomonas citri pv. citri str. 306] |
| 4M29_A | 3.16e-21 | 296 | 682 | 2 | 386 | Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15] |
| 4EKJ_A | 4.20e-21 | 296 | 682 | 2 | 386 | ChainA, Beta-xylosidase [Caulobacter vibrioides] |
| 3OOU_A | 1.11e-12 | 166 | 264 | 7 | 105 | Thestructure of a protein with unkown function from Listeria innocua [Listeria innocua] |
| 3MN2_A | 3.40e-06 | 166 | 260 | 4 | 100 | Thecrystal structure of a probable AraC family transcriptional regulator from Rhodopseudomonas palustris CGA009 [Rhodopseudomonas palustris CGA009],3MN2_B The crystal structure of a probable AraC family transcriptional regulator from Rhodopseudomonas palustris CGA009 [Rhodopseudomonas palustris CGA009] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q936F1 | 1.10e-21 | 29 | 774 | 23 | 714 | Uncharacterized HTH-type transcriptional regulator OS=Staphylococcus aureus OX=1280 PE=4 SV=2 |
| Q7A882 | 1.10e-21 | 20 | 774 | 12 | 714 | Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1 |
| Q8NYT6 | 1.10e-21 | 20 | 774 | 12 | 714 | Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1 |
| Q6GD21 | 1.10e-21 | 20 | 774 | 12 | 714 | Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1 |
| Q99XB1 | 1.10e-21 | 20 | 774 | 12 | 714 | Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000034 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |