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CAZyme Information: MGYG000003097_01570

You are here: Home > Sequence: MGYG000003097_01570

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sp000436795
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp000436795
CAZyme ID MGYG000003097_01570
CAZy Family GT19
CAZyme Description Lipid-A-disaccharide synthase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
380 MGYG000003097_14|CGC2 43288.18 9.1778
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003097 3921942 MAG Spain Europe
Gene Location Start: 21791;  End: 22933  Strand: -

Full Sequence      Download help

MKYYLIVGEA  SGDLHASNLM  RALQHEDPQA  EFRFFGGDLM  KAVGGTCVKH  YRELAYMGFI60
PVLLHLRTIF  RNMDFCKKDV  EAWQPDVLIL  VDYPGFNLKI  AEYINRHTQI  PVYYYISPKI120
WAWKEYRIKN  IKRDVDELFS  ILPFEVDFFK  KHQYPIHYVG  NPCVDAVDDF  RRKGQETFSE180
FITANGLEDK  PIIALLAGSR  RQEIKDNLTR  MIEAARSFPQ  YQFVVAGAPG  IEPDFYKRYI240
DSSTKIVFGQ  TYRLLQQAEA  ALVTSGTATL  ETALFRVPQV  VCYYISAGKL  VSFLRRHILK300
VKYISLVNLI  ADREVVTELV  ADGMTVSNIK  KELAKIISGG  NGRSRMLSEY  DRLIGILGEP360
GASERAAAQI  TALLKVRSKA  380

Enzyme Prediction      help

No EC number prediction in MGYG000003097_01570.

CAZyme Signature Domains help

Created with Snap19385776951141331521711902092282472662853043233423614353GT19
Family Start End Evalue family coverage
GT19 4 353 8.5e-111 0.9774011299435028

CDD Domains      download full data without filtering help

Created with Snap19385776951141331521711902092282472662853043233423611379lpxB1375LpxB4370LpxB5373lpxB1367PRK14089
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK00025 lpxB 1.01e-102 1 379 2 380
lipid-A-disaccharide synthase; Reviewed
COG0763 LpxB 1.13e-95 1 375 2 380
Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis].
pfam02684 LpxB 2.08e-72 4 370 2 373
Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide.
TIGR00215 lpxB 9.62e-63 5 373 10 385
lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]
PRK14089 PRK14089 2.26e-48 1 367 2 341
lipid-A-disaccharide synthase.

CAZyme Hits      help

Created with Snap19385776951141331521711902092282472662853043233423611370QRO23865.1|GT191379ADY36062.1|GT191375AII64873.1|GT191375AND19645.1|GT191375QJR71433.1|GT19
Hit ID E-Value Query Start Query End Hit Start Hit End
QRO23865.1 4.17e-221 1 370 1 370
ADY36062.1 9.70e-212 1 379 1 379
AII64873.1 1.03e-198 1 375 1 378
AND19645.1 1.03e-198 1 375 1 378
QJR71433.1 1.03e-198 1 375 1 378

PDB Hits      download full data without filtering help

Created with Snap193857769511413315217119020922824726628530432334236153535W8S_A53535W8N_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
5W8S_A 1.91e-36 5 353 11 361
LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)]
5W8N_A 5.13e-36 5 353 11 361
LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)]

Swiss-Prot Hits      download full data without filtering help

Created with Snap19385776951141331521711902092282472662853043233423615374sp|Q1D393|LPXB_MYXXD5375sp|Q2LVL8|LPXB_SYNAS5374sp|Q39T49|LPXB_GEOMG5375sp|B3E4H8|LPXB_TRIL11374sp|Q1R020|LPXB_CHRSD
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q1D393 2.34e-64 5 374 9 378
Lipid-A-disaccharide synthase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=lpxB PE=3 SV=1
Q2LVL8 1.41e-62 5 375 8 379
Lipid-A-disaccharide synthase OS=Syntrophus aciditrophicus (strain SB) OX=56780 GN=lpxB PE=3 SV=1
Q39T49 3.41e-60 5 374 11 380
Lipid-A-disaccharide synthase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=lpxB PE=3 SV=1
B3E4H8 2.15e-57 5 375 11 381
Lipid-A-disaccharide synthase OS=Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=lpxB PE=3 SV=1
Q1R020 9.02e-57 1 374 1 375
Lipid-A-disaccharide synthase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=lpxB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003097_01570.