CAZyme Information: MGYG000003114_02622

Basic Information

• Species: Clostridium sp900547475
• Lineage: Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium sp900547475
• CAZyme ID: MGYG000003114_02622
• CAZy Family: GH39
• CAZyme Description: HTH-type transcriptional activator RhaS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
688	MGYG000003114_36|CGC1	81727.52	4.6797

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003114	3467094	MAG	United States	North America

• Gene Location: Start: 5427; End: 7493 Strand: +

Full Sequence      

MRREYINYPFELPIKISYLNIKNYPTHWHNSIEIIYVLKGSLQIKIDTDSFILNEREVEI
INSDESHEIQSLEDNKVLIFNIDPFFFEKYYKDINNIFFYTNSNDTEDQNGSEYEELKTL
LSQMLCEYVQKLEDYDEEIEELLITLLYHLVNNFHYLTYEKEELKEKTDQLARYHRISKY
IYNNYNNNITLQEIAKKEFLSTHYLSHEIKYATGYSFTDLINLTRIEESIKLLLDSDMSI
SEISDEIGFSHVRYFNKNFKYYFGCTPLQYRKKYATTEKEYELSKQFVELSLNDALETLS
YNLENYNRFNFENKLWNIHVNVDKILNPLEKEFKECINLGESFDLLIEDNKDILEEIQEE
IHFEYGRLEKMFHSDMGVFLDSDFYNWNKAKGVLEFLSNIYLKPLILLDNLDYSLEKYIN
ILSSFLDYFTELDIVEVADFKFQFNSRLSEDIKYNLRQYIKNYYQLEVCEIDFTSKSDLN
SIYDTAYMLPYIIHNTIFKGNSLSFLKAFDVLEKEINITNEVFIGAPGIVNDMGIRKPSY
YAYYLLSKLGNDIIALDDGYIVTKSDNYYAILLYSHNDDVNNLASYEDIYQKGGIKKSFE
RKYSLNIVNIKNSTRIITYELNESLGSSYNYWLAMGSPDRLSKEEKEILHKASYPKIEFK
YSKKSSVLNIITELKGYGAKLIVLKNIK

Enzyme Prediction     

No EC number prediction in MGYG000003114_02622.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	472	641	5.4e-19	0.37587006960556846

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
smart00342	HTH_ARAC	9.96e-22	190	271	3	84	helix_turn_helix, arabinose operon control protein.
pfam12833	HTH_18	4.56e-20	194	273	1	81	Helix-turn-helix domain.
COG2207	AraC	1.18e-19	190	274	38	122	AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
COG4753	YesN	5.19e-12	87	275	283	475	Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
pfam01229	Glyco_hydro_39	3.60e-09	456	658	254	460	Glycosyl hydrolases family 39.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATD56640.1	0.0	1	688	1	689
QBJ75981.1	0.0	1	688	1	689
SLK21057.1	0.0	1	688	1	689
ATD55683.1	0.0	1	688	1	689
AYE35030.1	0.0	1	688	1	689

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3LSG_A	3.69e-09	190	272	21	103	Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum]
4M29_A	5.03e-08	474	649	283	460	Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A	6.64e-08	474	649	283	460	ChainA, Beta-xylosidase [Caulobacter vibrioides]
6YYH_A	4.36e-06	501	657	333	474	Crystalstructure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q5HJR8	3.66e-13	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SACOL0084 OS=Staphylococcus aureus (strain COL) OX=93062 GN=SACOL0084 PE=4 SV=2
Q6GKK1	8.38e-13	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q6GD21	3.33e-12	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q8NYT6	3.33e-12	30	658	21	713	Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q7A882	4.39e-12	30	658	21	713	Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000069	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003114_02622.