CAZyme Information: MGYG000003119_01649

Basic Information

• Species: Capnocytophaga ochracea
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; Capnocytophaga ochracea
• CAZyme ID: MGYG000003119_01649
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
564	MGYG000003119_58|CGC1	64131.14	8.4403

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003119	2451559	MAG	United States	North America

• Gene Location: Start: 2276; End: 3970 Strand: -

Full Sequence      

MKTFPIALCTALLCFASCKTAVTTPATPAQMEVGSHKHIVLNKDTYHFYLNQTTDKELYI
SNHDQTNPKKVGLYLENLNDVVIDGSNSEWLFHGTILPIVVKNCTNITLKNFSIDFATPH
LRQLHITEVDAKNNTVKAQLYPEGNYKIKDGKLFFTGEDYEENPFGGMIFRADKRLAYKR
ADVNFNPTKITEIAPNEFRIEGIGAKPYLEKGERFVLRTYTRPTPAIFVTESKNVKLENI
TVHNTQGMGLLAQLTKNITLNRFRVALKEGSERYFTTQADATHFSACKGLIRSENGVYEG
MADDAINVHGTYLKVIAREDNHTIKAQYMHPQSWGFLWGNVGDKVQFIASKTMDVIGDKT
YRIQAIKAVDKPTEVGAKIFKITFNEILPAEVNSDTPCGVENLTWTPEVIFKNNIVRNNR
ARGALFSTPKKVVCANNTFDHTHGTAILLCGDCNGWYETGACHNVIIKNNHFINALTANY
QFTNAIISIYPEIPNLEAQQKYFHSNITIENNVFETFDEPILYAKSVENLIYRNNKIIKN
QEFKPFHWNKERFKLERTKNVKID

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	33	563	6.7e-209	0.9397810218978102

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam13229	Beta_helix	0.003	409	540	34	137	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM54153.1	0.0	1	564	1	564
ALC96957.1	0.0	1	564	1	564
ACU91763.1	0.0	1	564	1	564
QLF49606.1	0.0	1	564	1	564
AVM50150.1	0.0	1	563	1	561

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	9.05e-71	32	563	56	592	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	4.76e-70	32	563	56	592	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
A6LFT2	2.10e-189	39	564	64	589	Alpha-1,3-galactosidase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=glaB PE=3 SV=1
A6KWM0	2.82e-187	29	563	52	590	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB1 PE=3 SV=1
Q64XV2	6.26e-187	46	563	72	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaB PE=3 SV=1
Q5LGZ8	8.87e-187	46	563	72	593	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaB PE=1 SV=1
A6L2M8	2.62e-183	29	564	52	591	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB2 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000002	0.001000	0.999019	0.000000	0.000001	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003119_01649.