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CAZyme Information: MGYG000003132_00304

You are here: Home > Sequence: MGYG000003132_00304

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Dysgonomonas sp900556485
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Dysgonomonas; Dysgonomonas sp900556485
CAZyme ID MGYG000003132_00304
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
475 MGYG000003132_1|CGC6 53487.57 10.0006
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003132 2983269 MAG United States North America
Gene Location Start: 334144;  End: 335571  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003132_00304.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd01825 SGNH_hydrolase_peri1 1.31e-42 311 467 24 189
SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
pfam01476 LysM 4.76e-13 201 243 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
pfam13472 Lipase_GDSL_2 1.40e-12 301 454 31 176
GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.
cd00118 LysM 2.67e-11 199 242 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
COG1388 LysM 4.78e-11 160 248 30 116
LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIK56104.1 4.29e-139 1 475 1 490
QIK61460.1 1.50e-138 22 475 3 475
QSW87548.1 2.04e-127 17 474 25 473
ABQ03283.1 1.49e-124 17 474 23 473
AXG73103.1 1.98e-124 38 474 43 470

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4K3U_A 2.96e-13 51 453 41 358
PeptidoglycanO-acetylesterase in action, 30 min [Neisseria meningitidis 4119],4K3U_B Peptidoglycan O-acetylesterase in action, 30 min [Neisseria meningitidis 4119],4K40_A Peptidoglycan O-acetylesterase in action, 0 min [Neisseria meningitidis LNP21362],4K40_B Peptidoglycan O-acetylesterase in action, 0 min [Neisseria meningitidis LNP21362],4K7J_A Peptidoglycan O-acetylesterase in action, 5 min [Neisseria meningitidis 4119],4K7J_B Peptidoglycan O-acetylesterase in action, 5 min [Neisseria meningitidis 4119]
4K9S_A 3.97e-12 51 392 41 291
PeptidoglycanO-acetylesterase in action, setmet [Neisseria meningitidis 4119],4K9S_B Peptidoglycan O-acetylesterase in action, setmet [Neisseria meningitidis 4119]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q49UX4 6.94e-07 193 294 21 126
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000391 0.998841 0.000223 0.000184 0.000175 0.000155

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003132_00304.