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CAZyme Information: MGYG000003137_00430

You are here: Home > Sequence: MGYG000003137_00430

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bradyrhizobium sp000015165
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp000015165
CAZyme ID MGYG000003137_00430
CAZy Family GH39
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
610 MGYG000003137_1|CGC3 66364.05 7.1627
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003137 8388709 MAG United States North America
Gene Location Start: 496796;  End: 498628  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003137_00430.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 113 402 4.5e-31 0.728538283062645

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
smart00633 Glyco_10 1.46e-10 104 316 3 221
Glycosyl hydrolase family 10.
pfam01229 Glyco_hydro_39 1.45e-07 114 474 74 478
Glycosyl hydrolases family 39.
COG3693 XynA 3.16e-07 104 217 69 188
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
cd21510 agarase_cat 4.46e-06 177 252 100 189
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABQ33295.1 0.0 1 610 5 614
ACF02263.1 6.09e-206 38 608 29 603
QQM04877.1 1.22e-205 69 608 61 603
CAE28783.1 1.45e-205 69 608 66 608
QLH72363.1 2.46e-205 69 608 61 603

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.758776 0.222484 0.015928 0.000714 0.000613 0.001489

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003137_00430.