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CAZyme Information: MGYG000003137_00947
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Bradyrhizobium sp000015165 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp000015165 | |||||||||||
| CAZyme ID | MGYG000003137_00947 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | Oxygen-dependent choline dehydrogenase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 199119; End: 200831 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 7 | 534 | 3.3e-164 | 0.9929577464788732 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG2303 | BetA | 0.0 | 4 | 541 | 4 | 541 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| PRK02106 | PRK02106 | 0.0 | 3 | 560 | 1 | 560 | choline dehydrogenase; Validated |
| pfam00732 | GMC_oxred_N | 2.03e-54 | 74 | 301 | 12 | 216 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| pfam05199 | GMC_oxred_C | 1.15e-42 | 393 | 529 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
| PLN02785 | PLN02785 | 8.24e-29 | 4 | 525 | 53 | 568 | Protein HOTHEAD |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CAB3230510.1 | 9.13e-170 | 7 | 546 | 24 | 568 |
| AWP09430.1 | 3.70e-165 | 8 | 553 | 20 | 570 |
| ANI26486.1 | 3.50e-162 | 8 | 546 | 71 | 614 |
| QWC20507.1 | 1.71e-152 | 5 | 549 | 3 | 540 |
| CEF60566.1 | 1.14e-133 | 10 | 543 | 35 | 578 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2JBV_A | 2.75e-89 | 5 | 534 | 11 | 527 | Crystalstructure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
| 3NNE_A | 2.75e-89 | 5 | 534 | 11 | 527 | Crystalstructure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
| 3LJP_A | 1.07e-88 | 5 | 534 | 11 | 527 | ChainA, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
| 6YRU_AAA | 5.51e-86 | 2 | 544 | 2 | 571 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis] |
| 6YS1_AAA | 7.73e-86 | 2 | 544 | 2 | 571 | ChainAAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A5VPA6 | 8.35e-167 | 7 | 541 | 2 | 533 | Oxygen-dependent choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) OX=444178 GN=betA PE=3 SV=1 |
| B0CKN4 | 8.35e-167 | 7 | 541 | 2 | 533 | Oxygen-dependent choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) OX=470137 GN=betA PE=3 SV=1 |
| Q6LGH5 | 1.56e-166 | 8 | 545 | 5 | 542 | Oxygen-dependent choline dehydrogenase OS=Photobacterium profundum (strain SS9) OX=298386 GN=betA PE=3 SV=1 |
| A6X2G7 | 3.35e-166 | 7 | 543 | 2 | 535 | Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1 |
| A9M9H8 | 4.75e-166 | 7 | 541 | 2 | 533 | Oxygen-dependent choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) OX=483179 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000055 | 0.000007 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |