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CAZyme Information: MGYG000003137_06583

You are here: Home > Sequence: MGYG000003137_06583

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bradyrhizobium sp000015165
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Bradyrhizobium; Bradyrhizobium sp000015165
CAZyme ID MGYG000003137_06583
CAZy Family GH15
CAZyme Description Glucoamylase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
768 MGYG000003137_46|CGC1 84940.94 5.9452
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003137 8388709 MAG United States North America
Gene Location Start: 26795;  End: 29101  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003137_06583.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH15 264 647 3.4e-90 0.9833795013850416

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR01535 glucan_glucosid 0.0 9 666 1 648
glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
cd07430 GH15_N 2.17e-77 1 241 17 260
Glycoside hydrolase family 15, N-terminal domain. Members of this family are N-terminal domains uniquely found in bacterial and archaeal glucoamylases and glucodextranases. Glucoamylase (glucan 1,4-alpha-glucosidase; 4-alpha-D-glucan glucohydrolase; amyloglucosidase; exo-1,4-alpha-glucosidase; gamma-amylase; lysosomal alpha-glucosidase; EC 3.2.1.3) hydrolyzes beta-1,4-glucosidic linkages of starch, glycogen and malto-oligosaccharides, releasing beta-D-glucose from the non-reducing end. Glucodextranase (glucan 1,6-alpha-glucosidase; exo-1,6-alpha-glucosidase; EC 3.2.1.70) uses an inverting reaction mechanism to hydrolyze alpha-1,6-glucosidic linkages of dextran and related oligosaccharides, releasing beta-D-glucose from the non-reducing end. These N-terminal domains adopt a structure consisting of antiparallel beta-strands, divided into two beta-sheets, with one sheet wrapped by an extended polypeptide, which appears to stabilize the domain. The function of these domains in the enzymes is as yet unknown. However, it is suggested that domain N of bacterial GA is involved in folding and/or the thermostability of the A domain that forms an (alpha/alpha)6-barrel structure.
pfam09137 Glucodextran_N 5.23e-75 2 243 19 263
Glucodextranase, domain N. Members of this family, which are uniquely found in bacterial and archaeal glucoamylases and glucodextranases, adopt a structure consisting of 17 antiparallel beta-strands. These beta-strands are divided into two beta-sheets, and one of the beta-sheets is wrapped by an extended polypeptide, which appears to stabilize the domain. Members of this family are mainly concerned with catalytic activity, hydrolysing alpha-1,6-glucosidic linkages of dextran to release beta-D-glucose from the non-reducing end via an inverting reaction mechanism.
COG3387 SGA1 6.27e-64 11 651 9 605
Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family [Carbohydrate transport and metabolism].
pfam00723 Glyco_hydro_15 3.38e-26 266 647 10 416
Glycosyl hydrolases family 15. In higher organisms this family is represented by phosphorylase kinase subunits.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABQ39780.1 0.0 1 761 71 831
ACS39698.1 0.0 1 766 58 823
AER56638.1 0.0 2 761 34 793
BAV35013.1 0.0 1 746 31 774
ADE10637.1 6.40e-318 1 746 30 772

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1UG9_A 5.15e-118 2 674 23 691
CrystalStructure of Glucodextranase from Arthrobacter globiformis I42 [Arthrobacter globiformis],1ULV_A Crystal Structure of Glucodextranase Complexed with Acarbose [Arthrobacter globiformis]
1LF6_A 1.25e-99 9 666 48 682
CRYSTALSTRUCTURE OF BACTERIAL GLUCOAMYLASE [Thermoanaerobacterium thermosaccharolyticum],1LF6_B CRYSTAL STRUCTURE OF BACTERIAL GLUCOAMYLASE [Thermoanaerobacterium thermosaccharolyticum],1LF9_A Crystal Structure Of Bacterial Glucoamylase Complexed With Acarbose [Thermoanaerobacterium thermosaccharolyticum],1LF9_B Crystal Structure Of Bacterial Glucoamylase Complexed With Acarbose [Thermoanaerobacterium thermosaccharolyticum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P29761 1.07e-98 9 666 65 699
Glucoamylase OS=Clostridium sp. (strain G0005) OX=72582 GN=cga PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000053 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003137_06583.