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CAZyme Information: MGYG000003138_00479

You are here: Home > Sequence: MGYG000003138_00479

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Streptococcus pseudopneumoniae_O
Lineage Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pseudopneumoniae_O
CAZyme ID MGYG000003138_00479
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
401 MGYG000003138_3|CGC1 42525.65 4.022
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003138 1796209 MAG United States North America
Gene Location Start: 5660;  End: 6865  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003138_00479.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK10811 rne 2.77e-11 88 261 847 1031
ribonuclease E; Reviewed
cd00118 LysM 8.81e-10 47 90 1 44
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
smart00257 LysM 2.11e-08 49 90 2 43
Lysin motif.
pfam01476 LysM 3.89e-08 49 90 1 41
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
PRK10811 rne 1.57e-05 85 217 880 1037
ribonuclease E; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QBZ12770.1 1.96e-183 1 401 1 400
VFH52001.1 6.39e-182 1 401 1 380
BBP08966.1 1.43e-178 1 401 1 400
VFH50280.1 4.04e-178 1 401 1 380
VFI49691.1 2.69e-176 1 401 1 380

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000355 0.998869 0.000181 0.000198 0.000182 0.000158

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003138_00479.