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CAZyme Information: MGYG000003152_00412

You are here: Home > Sequence: MGYG000003152_00412

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella denticola
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella denticola
CAZyme ID MGYG000003152_00412
CAZy Family GH13
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
824 MGYG000003152_2|CGC3 92376.76 6.0232
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003152 2774939 MAG United States North America
Gene Location Start: 111595;  End: 114069  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003152_00412.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH13 55 326 4.1e-61 0.9792387543252595

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd11314 AmyAc_arch_bac_plant_AmyA 1.74e-131 29 355 1 302
Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
PLN02361 PLN02361 4.26e-52 29 373 13 370
alpha-amylase
PLN02784 PLN02784 4.37e-49 29 355 504 843
alpha-amylase
PRK09441 PRK09441 1.28e-48 28 346 4 393
cytoplasmic alpha-amylase; Reviewed
PLN00196 PLN00196 7.04e-45 29 397 26 419
alpha-amylase; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUB70324.1 0.0 1 824 1 824
QUI94087.1 0.0 1 824 1 824
AXV49298.1 0.0 1 824 1 824
QUB88368.1 0.0 1 824 1 824
QUB92579.1 0.0 1 823 1 823

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3BSG_A 4.57e-42 29 413 3 408
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]
1HT6_A 7.00e-42 29 409 3 404
CrystalStructure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 [Hordeum vulgare],1P6W_A Crystal structure of barley alpha-amylase isozyme 1 (AMY1) in complex with the substrate analogue, methyl 4I,4II,4III-tri-thiomaltotetraoside (thio-DP4) [Hordeum vulgare],1RPK_A Crystal structure of barley alpha-amylase isozyme 1 (amy1) in complex with acarbose [Hordeum vulgare]
2QPS_A 2.39e-41 29 372 3 371
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]
2QPU_A 2.39e-41 29 372 3 371
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare],2QPU_B Chain B, Alpha-amylase type A isozyme [Hordeum vulgare],2QPU_C Chain C, Alpha-amylase type A isozyme [Hordeum vulgare]
3BSH_A 5.31e-41 29 413 3 408
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P08117 1.69e-45 29 372 27 376
Alpha-amylase AMY3 OS=Triticum aestivum OX=4565 GN=AMY1.1 PE=2 SV=1
Q8VZ56 1.35e-44 29 355 27 372
Alpha-amylase 1 OS=Arabidopsis thaliana OX=3702 GN=AMY1 PE=1 SV=1
P17859 1.82e-42 29 355 25 372
Alpha-amylase OS=Vigna mungo OX=3915 GN=AMY1.1 PE=2 SV=1
P27932 6.70e-42 2 355 3 378
Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica OX=39947 GN=AMY1.2 PE=2 SV=2
Q8LFG1 7.16e-42 29 373 27 382
Probable alpha-amylase 2 OS=Arabidopsis thaliana OX=3702 GN=AMY2 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000210 0.999220 0.000147 0.000149 0.000131 0.000130

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003152_00412.