CAZyme Information: MGYG000003163_01725

Basic Information

• Species: Phocaeicola sp900546645
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900546645
• CAZyme ID: MGYG000003163_01725
• CAZy Family: GH110
• CAZyme Description: Alpha-1,3-galactosidase B

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
603		68324.67	7.185

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003163	2819390	MAG	United States	North America

• Gene Location: Start: 19120; End: 20931 Strand: -

Full Sequence      

MRVKRIFQIGVSAVAFVLGALPVSAQHQKPNIYTYEVADFGLKPNSSKNASPVLQRLLKK
IKAERSGQDSIVIRFGKGTYQFHEKGAAMREYYISNHDQTNPKLVGIPLEDMNHLALEGE
GAEFVFHGQMLPVSLLRSSNCTLRNFSIDFANPHISQVTVSACTSDGKVIVEPAPWVEYR
ITKDSLFEVYGEGWSYRHNFGIAFEEKTKRLVYNSSDCWLPTKGAYRVGENRICMPGWKG
SYLTPGTRVVLRGWERPAPGIFLSHNLNTSFENVTVHYAEGMGLLAQLCENITLDRFNVC
LKGSQDPRYFTTQADATHFSGCKGKIISCNGLYEGMMDDAINVHGTYLKVVKRIDDHTLV
GRYMHDQAWGFEWGRVGDEVQFVRSATMELTDQTNRIASIRPYDREQVDGAREFLISFEH
PVEAEVTEKEGFGIENLTWTPTVLFANNVIRNNRARGALFSTPRKTVVEDNLFDHTSGTA
ILLCGDCNGWFETGACREVLIRRNKFVNALTCMFQFTEGVISIYPEIPDLKNQQKYFHGG
PEGGIVIEDNDFDMFDAPVLYAKSVDGLIFRNNRIRMNEEYKPFHKNKCRFKLERVTNVQ
IAE

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH110	35	603	1.4e-224	0.9945255474452555

CDD Domains     

MGYG000003163_01725 has no CDD domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QQY40418.1	0.0	9	603	6	594
ABR37834.1	0.0	9	603	4	592
QUT56908.1	0.0	9	603	4	592
QQY44658.1	0.0	9	603	6	594
AVM57209.1	8.51e-318	23	603	15	595

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7JW4_A	1.27e-79	27	602	20	593	Crystalstructure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta],7JW4_B Crystal structure of PdGH110B in complex with D-galactose [Pseudoalteromonas distincta]
7JWF_A	6.74e-79	27	602	20	593	Crystalstructure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_B Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_C Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta],7JWF_D Crystal structure of PdGH110B D344N in complex with alpha-(1,3)-galactobiose [Pseudoalteromonas distincta]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
A6KWM0	0.0	9	603	4	592	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB1 PE=3 SV=1
Q64XV2	7.44e-313	35	603	27	595	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain YCH46) OX=295405 GN=glaB PE=3 SV=1
Q5LGZ8	2.13e-312	35	603	27	595	Alpha-1,3-galactosidase B OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow) OX=272559 GN=glaB PE=1 SV=1
A6L2M8	8.06e-277	36	603	25	592	Alpha-1,3-galactosidase B OS=Phocaeicola vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / CCUG 4940 / NBRC 14291 / NCTC 11154) OX=435590 GN=glaB2 PE=3 SV=1
A6LFT2	8.27e-252	33	601	24	588	Alpha-1,3-galactosidase B OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) OX=435591 GN=glaB PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000265	0.999123	0.000156	0.000152	0.000150	0.000132

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003163_01725.