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CAZyme Information: MGYG000003184_01964

You are here: Home > Sequence: MGYG000003184_01964

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Mixta calida
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Mixta; Mixta calida
CAZyme ID MGYG000003184_01964
CAZy Family PL9
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
685 MGYG000003184_10|CGC1 73731.71 6.7013
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003184 4133670 MAG United States North America
Gene Location Start: 106348;  End: 108405  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 379 680 4.5e-92 0.8746666666666667

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 0.002 476 633 7 138
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AUY25975.1 0.0 1 685 1 685
AUX94129.1 0.0 1 685 1 684
QHM74846.1 0.0 1 685 1 685
QHM71761.1 0.0 1 685 1 686
ARJ42998.1 0.0 13 685 18 691

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 1.61e-30 377 684 11 342
ChainA, Pectate lyase [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 4.92e-249 30 682 34 689
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A7 1.29e-29 377 684 36 367
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P0C1A6 1.42e-28 377 683 36 354
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000290 0.999024 0.000189 0.000168 0.000154 0.000147

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003184_01964.