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CAZyme Information: MGYG000003196_00287

You are here: Home > Sequence: MGYG000003196_00287

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium sp900539985
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium sp900539985
CAZyme ID MGYG000003196_00287
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
648 71196.74 6.5773
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003196 2252984 MAG United States North America
Gene Location Start: 8060;  End: 10006  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003196_00287.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 106 371 2e-53 0.960352422907489

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 8.57e-63 101 378 47 316
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 4.59e-43 414 641 124 369
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 2.10e-38 100 370 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 3.05e-20 454 505 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 8.85e-17 560 610 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRQ67767.1 0.0 1 648 1 648
QRP21240.1 0.0 1 648 1 651
QQE52113.1 0.0 1 648 10 655
ATZ08810.1 0.0 1 648 10 655
ATZ06851.1 0.0 1 648 10 655

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 6.13e-246 32 647 4 614
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 3.54e-92 400 647 7 252
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
1SFR_A 1.99e-44 127 374 35 283
ChainA, Antigen 85-A [Mycobacterium tuberculosis],1SFR_B Chain B, Antigen 85-A [Mycobacterium tuberculosis],1SFR_C Chain C, Antigen 85-A [Mycobacterium tuberculosis]
7MYG_A 9.59e-44 129 363 30 265
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]
1DQZ_A 1.01e-43 129 363 32 267
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis],1DQZ_B Chain B, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D7 3.44e-259 14 647 22 657
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
P0C1D6 6.91e-259 14 647 22 657
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
P9WQP3 2.56e-43 127 374 77 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=fbpA PE=1 SV=1
P0C2T1 2.56e-43 127 374 77 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=fbpA PE=3 SV=1
A1KQD8 2.56e-43 127 374 77 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) OX=410289 GN=fbpA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000321 0.998985 0.000196 0.000166 0.000159 0.000140

TMHMM  Annotations      download full data without filtering help

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