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CAZyme Information: MGYG000003199_00050
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | HGM05190 sp900759815 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; HGM05190; HGM05190 sp900759815 | |||||||||||
| CAZyme ID | MGYG000003199_00050 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4349; End: 9082 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH105 | 481 | 844 | 5.9e-113 | 0.9819277108433735 |
| GH28 | 62 | 429 | 3e-76 | 0.9230769230769231 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 4.94e-85 | 26 | 416 | 72 | 451 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| pfam07470 | Glyco_hydro_88 | 2.12e-80 | 463 | 844 | 1 | 340 | Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases. |
| COG4225 | YesR | 9.79e-70 | 489 | 846 | 34 | 356 | Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]. |
| pfam00295 | Glyco_hydro_28 | 7.43e-25 | 64 | 442 | 1 | 311 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 6.33e-13 | 38 | 313 | 25 | 239 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ADE82894.1 | 0.0 | 2 | 1577 | 10 | 1596 |
| QVJ80657.1 | 0.0 | 2 | 1577 | 10 | 1596 |
| QQR09854.1 | 0.0 | 5 | 847 | 11 | 853 |
| ARE60790.1 | 0.0 | 5 | 847 | 11 | 853 |
| ASB36694.1 | 0.0 | 5 | 847 | 11 | 853 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3JUR_A | 9.32e-102 | 22 | 411 | 13 | 396 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 4WU0_A | 8.60e-80 | 489 | 846 | 23 | 361 | StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824] |
| 5OLP_A | 1.44e-71 | 32 | 401 | 40 | 401 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 1NC5_A | 8.92e-52 | 488 | 846 | 38 | 367 | Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis] |
| 2GH4_A | 3.17e-51 | 488 | 846 | 28 | 357 | ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O34559 | 4.89e-51 | 488 | 846 | 38 | 367 | Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1 |
| A7PZL3 | 8.04e-37 | 53 | 358 | 78 | 356 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| P0A3U6 | 1.08e-28 | 600 | 839 | 1 | 224 | Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1 |
| P0A3U7 | 1.08e-28 | 600 | 839 | 1 | 224 | 24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1 |
| P27644 | 4.67e-21 | 209 | 358 | 29 | 181 | Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.056710 | 0.942186 | 0.000289 | 0.000312 | 0.000239 | 0.000235 |