logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003200_01400

You are here: Home > Sequence: MGYG000003200_01400

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-873 sp900759845
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; CAG-873; CAG-873 sp900759845
CAZyme ID MGYG000003200_01400
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
420 46800.97 6.2454
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003200 2708478 MAG United States North America
Gene Location Start: 2217;  End: 3479  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003200_01400.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 76 415 8e-54 0.9138461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 1.36e-38 48 414 83 470
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 9.47e-12 133 383 42 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 8.65e-11 50 363 39 325
polygalacturonase/glycoside hydrolase family protein
PLN03003 PLN03003 2.80e-07 144 403 112 342
Probable polygalacturonase At3g15720
PLN03010 PLN03010 6.63e-06 45 345 44 305
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCD40899.1 1.13e-189 2 420 6 425
QCP73439.1 2.71e-189 9 412 10 415
QCD39791.1 2.71e-189 9 412 10 415
BCS85374.1 8.11e-172 21 412 26 416
QJR62619.1 5.18e-158 3 415 2 411

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 1.75e-23 46 392 43 405
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 1.86e-19 40 392 20 388
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
4C2L_A 9.28e-07 58 266 25 216
Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A7PZL3 1.38e-14 52 272 67 283
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P26216 8.04e-12 45 344 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1
P35338 1.43e-11 45 344 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
P35339 1.43e-11 45 344 38 315
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P15922 8.42e-10 25 161 131 270
Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000793 0.698062 0.300333 0.000270 0.000283 0.000245

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003200_01400.