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CAZyme Information: MGYG000003208_01681
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E extremaustralis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E extremaustralis | |||||||||||
| CAZyme ID | MGYG000003208_01681 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Alginate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 58940; End: 60049 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 23 | 340 | 4e-186 | 0.9968354430379747 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 0.0 | 1 | 362 | 1 | 359 | polysaccharide lyase. |
| cd00244 | AlgLyase | 0.0 | 19 | 358 | 1 | 339 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 1.53e-64 | 59 | 300 | 1 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SDF64819.1 | 1.44e-280 | 1 | 369 | 1 | 369 |
| QDH63463.1 | 1.09e-275 | 1 | 369 | 1 | 369 |
| QPO19004.1 | 6.31e-275 | 1 | 369 | 1 | 369 |
| AQY64467.1 | 7.34e-275 | 1 | 369 | 5 | 373 |
| AHC33765.1 | 2.10e-274 | 1 | 369 | 5 | 373 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4OZV_A | 2.51e-161 | 23 | 358 | 1 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
| 4OZW_A | 8.32e-160 | 23 | 358 | 1 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
| 7FHZ_A | 1.57e-50 | 49 | 355 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHU_A | 1.89e-50 | 49 | 355 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FI2_A | 5.64e-49 | 49 | 355 | 1 | 297 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P59786 | 8.14e-273 | 1 | 369 | 5 | 373 | Alginate lyase OS=Pseudomonas fluorescens OX=294 GN=algL PE=3 SV=1 |
| C3KDZ3 | 8.14e-273 | 1 | 369 | 5 | 373 | Alginate lyase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=algL PE=3 SV=1 |
| Q3KHR0 | 1.19e-247 | 1 | 369 | 6 | 374 | Alginate lyase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=algL PE=3 SV=1 |
| Q9ZNB7 | 2.67e-244 | 1 | 369 | 6 | 374 | Alginate lyase OS=Cobetia marina OX=28258 GN=algL PE=3 SV=1 |
| Q4KHY5 | 4.70e-235 | 1 | 366 | 6 | 371 | Alginate lyase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000258 | 0.999069 | 0.000175 | 0.000169 | 0.000156 | 0.000145 |