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CAZyme Information: MGYG000003214_03581
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | NSJ-32 sp014384895 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; UBA1390; NSJ-32; NSJ-32 sp014384895 | |||||||||||
| CAZyme ID | MGYG000003214_03581 | |||||||||||
| CAZy Family | GH33 | |||||||||||
| CAZyme Description | HTH-type transcriptional activator RhaR | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 10201; End: 11883 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH33 | 22 | 316 | 3.8e-30 | 0.9005847953216374 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd15482 | Sialidase_non-viral | 1.96e-49 | 22 | 332 | 16 | 339 | Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases. |
| smart00342 | HTH_ARAC | 1.42e-32 | 470 | 553 | 1 | 84 | helix_turn_helix, arabinose operon control protein. |
| COG2207 | AraC | 1.88e-32 | 447 | 560 | 13 | 126 | AraC-type DNA-binding domain and AraC-containing proteins [Transcription]. |
| pfam13088 | BNR_2 | 6.56e-30 | 31 | 303 | 1 | 280 | BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. |
| COG4753 | YesN | 1.90e-25 | 453 | 553 | 371 | 471 | Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AHF93797.1 | 8.16e-106 | 12 | 355 | 25 | 372 |
| QOV18850.1 | 8.79e-106 | 10 | 354 | 20 | 379 |
| AWL41261.1 | 3.09e-99 | 11 | 354 | 20 | 374 |
| AEN08048.1 | 1.26e-98 | 11 | 354 | 20 | 375 |
| QDU03573.1 | 1.03e-94 | 11 | 352 | 48 | 386 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2K9S_A | 1.36e-12 | 458 | 557 | 7 | 107 | Solutionstructure of dna binding domain of E. coli arac [Escherichia coli K-12] |
| 3LSG_A | 1.16e-09 | 470 | 554 | 19 | 103 | Thecrystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_B The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_C The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_D The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum],3LSG_E The crystal structure of the C-terminal domain of the two-component response regulator yesN from Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [Fusobacterium nucleatum subsp. nucleatum] |
| 3W6V_A | 1.76e-07 | 458 | 553 | 42 | 137 | Crystalstructure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA [Streptomyces griseus] |
| 4FE4_A | 3.65e-07 | 458 | 554 | 289 | 385 | Crystalstructure of apo E. coli XylR [Escherichia coli K-12],4FE4_B Crystal structure of apo E. coli XylR [Escherichia coli K-12],4FE4_C Crystal structure of apo E. coli XylR [Escherichia coli K-12] |
| 4FE7_A | 3.84e-07 | 458 | 554 | 309 | 405 | structureof xylose-binding transcription activator xylR [Escherichia coli] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P77402 | 1.10e-13 | 453 | 557 | 179 | 283 | Uncharacterized HTH-type transcriptional regulator YdiP OS=Escherichia coli (strain K12) OX=83333 GN=ydiP PE=4 SV=1 |
| P19219 | 2.55e-12 | 444 | 554 | 92 | 199 | Bifunctional transcriptional activator/DNA repair enzyme AdaA OS=Bacillus subtilis (strain 168) OX=224308 GN=adaA PE=1 SV=1 |
| P0A9E1 | 6.08e-12 | 417 | 558 | 136 | 282 | Arabinose operon regulatory protein OS=Escherichia coli O157:H7 OX=83334 GN=araC PE=3 SV=1 |
| P0A9E0 | 6.08e-12 | 417 | 558 | 136 | 282 | Arabinose operon regulatory protein OS=Escherichia coli (strain K12) OX=83333 GN=araC PE=1 SV=1 |
| P07642 | 1.32e-11 | 440 | 553 | 166 | 282 | Arabinose operon regulatory protein OS=Dickeya chrysanthemi OX=556 GN=araC PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000044 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |