CAZyme Information: MGYG000003233_01735

Basic Information

• Species: Sodaliphilus pleomorphus
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Muribaculaceae; Sodaliphilus; Sodaliphilus pleomorphus
• CAZyme ID: MGYG000003233_01735
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1004		110208.19	8.5895

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003233	2919315	MAG	United States	North America

• Gene Location: Start: 14187; End: 17201 Strand: -

Full Sequence      

MTISKKFLLILVALLAVTTAASAKRQPAIFNKVDKRAMNAWVDKQFNAMTPDERITQLFV
MAVDPRNTVASETVKKLVSEYRVGGLIFNESDIVSQAKITNYAQSLAKVPLLITLDAEWG
PSMRLEDAPKFPRNLYLGAISDDAMFYNYGREVARELKRLGVNVDFAPVLDVIDRPGTVV
GARSYGSDPELVSRHGIAFARGLEDGGILSVGKHFPGHGSTTADSHKTLPTVDKSLKELE
LFDFVPFKRYIDAGLGGMLTAHLYIPAISRERKPGTMSPRYVTDLLQKKMGFDGLIFTDA
LGMEGAKAVGGSVCVGALLAGNDVLLMPDEVPGQLAAIKAAIASGKLKQKLIDERCKKML
RFKYALGLYNQPKVDIDNIVADVNDPCAAVLKRQLAAASITVVRDAQGILPVKGLQNRRI
AVVTMGNENDLQSMFQRRCANYAQCTPFNFNLGGDIKALADQVKASGSNVLILSVASSDY
VAAARYLASHFADHLHKVIVAVMSDPQRLDEVGALLDDSYVSAAVLAYDNSTVSEDYLAQ
TIFGGNAARGVLPVNVKTGKPDGGLKAGTGIKYDACRLGYTIPAEVGFKPSLTALVDSVC
RYGVQQHAFSGCEVVVARHGKIVFNRAYGEIDYDSGIPVTENTLFGLASVSKATGTLSGV
MKCYDEGKFLLDDKVSTVIPGMRNTDEKDITFREMLYHESGLPPELSMWYMMFDPKTYTG
PLFTSTPNQYNTIKFMNNAYGNKFAKLRTDILSTVKTDKFNWPIAAGLWGGQVTYDSIMN
RIYHQQLHEKRYVYSDLNFALLGNAVQNMSGMPLNYFVENNFFAPLGAYHTLYRPLSRFA
GSQIAYTEYDPFLRHQHVHGYVHDELAAFSGGVQGNAGLFSNANDLCKLLQMWLNGGTYG
GQRFLKASTVETFTTEKSTKSHRGLGFDKPQPDNLRASSTCDEAPAEVYGHTGFTGTCFW
VDPKNDMIYIFLSNRVNPTRNNPAFTRVSARSHIQSILYKSIVK

Enzyme Prediction     

No EC number prediction in MGYG000003233_01735.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	104	327	2e-54	0.9814814814814815

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	6.38e-84	49	424	1	361	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	6.49e-75	50	361	1	315	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	8.65e-51	583	985	30	410	putative periplasmic esterase; Provisional
PRK05337	PRK05337	1.67e-49	83	327	26	279	beta-hexosaminidase; Provisional
pfam00144	Beta-lactamase	3.44e-41	603	980	8	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QCD35538.1	3.78e-280	6	1002	6	989
AHF12964.1	6.63e-276	6	1002	2	987
QIK54477.1	1.15e-268	15	1004	15	993
ASB36988.1	1.57e-268	11	1002	10	990
ANU62524.1	1.57e-268	11	1002	10	990

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6K5J_A	9.03e-55	48	405	10	378	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3BMX_A	9.36e-53	7	450	5	491	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	9.31e-52	35	450	4	465	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	1.53e-51	35	450	34	495	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3SQL_A	7.26e-47	70	366	45	349	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	5.12e-52	7	450	5	491	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	4.64e-41	68	413	49	426	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7NWB7	6.02e-40	63	338	10	298	Beta-hexosaminidase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) OX=243365 GN=nagZ PE=3 SV=1
Q7WUL3	1.82e-39	40	427	17	413	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
P77619	1.03e-38	609	975	55	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000311	0.999061	0.000183	0.000157	0.000150	0.000135

TMHMM  Annotations     

start	end
7	29