CAZyme Information: MGYG000003237_00803

Basic Information

• Species: Victivallis sp002998355
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp002998355
• CAZyme ID: MGYG000003237_00803
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
751	MGYG000003237_25|CGC2	83741.96	6.723

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003237	4618450	MAG	United States	North America

• Gene Location: Start: 110270; End: 112525 Strand: -

Full Sequence      

MRLPLNRPLPAPGHWQIFWTVQGNKEGAEHGGTLQFASLEPSGPTPNRTSGFLFGVHSHP
YRWSKQDRELEARAAGLAGIKVLRLDIHWRALQPQPGGDWDFSYPDSVLRLYESHGIEFE
ALLGAPPRWAVTPGYVPVRSDIRGEIRPQTALYREYIRRVAERYRGKIRFYEQFNEPDLA
AFYNFGAEDYIELFRAGAEELRKADPAAVILTGGFATMLQVASSHAPGYIEKALAGTNGT
FDIHAHHEHGPFEAYCRIIDEQFLPMRRRLGIAAPWYANETALTAAGGREKRQAAALWKK
LLFAWSRGAVGYNWYDLRNDGFDPDNGEHNYGLLTNDFQPKPVYVAYNTLTGLFRTKKFL
RQLPAPDGIWLFEFADHQKRLLAAWSEVDTPPATLLFQTSAAGTVPELVDLMGNRRPIPT
VGGCFPLEASEYPVAVELPVSTDIEPAGQLFKAVFSGAAVAGKTFAFQFTANNPLPKPEN
FVLRFSPPPGIRLICPELRISLAAGESRCIPIEAQVDAKFRLPSGVRDFIKVEWHGINSG
WTGCFKLPVLSATVIPAKRNDGAPDFLLNRREQVHSLIGADPSREHLNWKGPEDLSATAR
LSQDGQNFILAVDVTDDRHCQPFSGSGVWQGDCVQFAIAVPEHSGLWEIGLTRRDDGKNE
VFCWSTPDGLDPAPVMKTAVLKTERDGNRTSYQVSIPLTALKLSPKLLRQGFRFNLLIND
NDGEGRENWIHIVPGIGESKTPEQYPLVVFE

Enzyme Prediction     

No EC number prediction in MGYG000003237_00803.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	100	390	1.7e-20	0.7262180974477959

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	1.77e-70	564	750	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	3.95e-16	588	735	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	1.40e-14	578	731	1	157	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
pfam00331	Glyco_hydro_10	1.75e-06	89	208	46	163	Glycosyl hydrolase family 10.
COG3693	XynA	1.99e-06	89	211	69	190	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	1.21e-211	13	751	567	1307
AVM46276.1	1.07e-198	13	751	403	1137
AVM44759.1	7.96e-179	9	751	229	965
AHF94342.1	2.22e-161	8	751	283	1033
AHF90198.1	3.62e-146	24	750	288	1005

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	5.80e-13	55	433	107	493	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]
4ZN2_A	2.38e-06	60	445	32	411	Glycosylhydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_B Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_C Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],4ZN2_D Glycosyl hydrolase from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1]
5BX9_A	2.38e-06	60	445	32	411	Structureof PslG from Pseudomonas aeruginosa [Pseudomonas aeruginosa PAO1],5BXA_A Structure of PslG from Pseudomonas aeruginosa in complex with mannose [Pseudomonas aeruginosa PAO1]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000052	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003237_00803.