CAZyme Information: MGYG000003237_02081

Basic Information

• Species: Victivallis sp002998355
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp002998355
• CAZyme ID: MGYG000003237_02081
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1307		143293.76	6.2921

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003237	4618450	MAG	United States	North America

• Gene Location: Start: 23600; End: 27523 Strand: +

Full Sequence      

MKPNRYQALATFAAAFAIGGQLPAAPVPFDGGVTRVAPGIENKRFETVNGVLPVSWDPKA
SPYVELAFNRTTALPSFTHATVKMIFKAPAGTPVGRMGLRLLDAKGETFQYSIPVRQAAD
GTIEAVWQIAPDTEFISWGNNADKKLDQPVRINAVSFDYDRNAAPSEITLSSIEAETENA
PAAGLAVALNAGIKKYVPGGGAPANYAYAAGKGVEVNWEPAKSKYIELVFNRPLQLPEFS
KVSVTARIEAPAGCPVRSIGLRMTDKSNETFQFSKSVNFAQGGVSEVTWEVSAGQWQNSW
GGNNDKQLDQPMKVYGFGVDYSQNLPEASFRILSVTAAVSGGEKTVATRPLYAFNLSNSF
NRIWGSGQPSLGPGGLLVNDIKGETSFSERMGSLTFFHSRPSVLKLDAALNAGNVKCYWV
FRDAANAQIKTAELPLKQGNNQLSFNLTETLAAAKLPVRVERFALVNSGNVPGSVLLTGS
TLGVDQPLTEAIDFTVLTGNDIHVLKSGQESALKYMFTNTSNQAGEFNISLDFKSFVGNT
HRESFTAKLLPGEIKIFSTEWKPEVLGHWDVTATVSEASAPAMQSKSSRSFAYLVPAGPT
PGRAPGFLFSVCTHSGRWSMVDQLREVEAAATCGVKVVRDSIEWGGIQPERGVWNFEKMD
FLVNAYETVGIEHQAMFAFTAKWAATPERQASKNWLDWNRGMPELNAWREYVRTMADRYR
GRIRFWEVWNEPDLGGFNQMSLEEYVQLQKATYEELAKAVPEAIVMTGGFATMTDHPGKK
SPTFHRDYLKLAKGAFKVHAYHEHGSFQQFAQVVDEKFLPMRRETGTEVPWYANETAIHS
LNGAERNQAITLFKKLLFAWSRGSIGYTWYDLRNDGYDPVDGEHNYGMVTNDFQPKPVYS
AYNMLAGLYRNMKYIRQYDLGANLWAFEFSDGADTLIPAWDESGFGSSLTLVVKSNASAA
STVDLMGNEKPQQLLDGMALLTLSPMPETLKLTGAASAEIAGRLLEVSAGGVAIPGHPLR
FKVKVFNPLSSDRTFRLALEKFPKSFRPLAPSHEVQVPAGKTAEVEFELEVGNDFKANYG
SSESLLVAYTLDGTPWKGNLVVPVNAAVAVPAGDNFNRKPDFVLNDRSQVVSITAADPAL
NHRVWRDANDLSAKIFLGEANGSFRLRADVTDDRHSQPFDGFNVWKGDNIQFAFQLPGQT
GHWEIGLSRLDSGKPEVIVFQTPTGFDPAAVAKACRLVTTREGNVTGYDFTLPGNAAGMT
PEMFRNGFRFNLLVNDNDGEGRDGWIHIAPGIGDSKNPDKFPFVVFE

Enzyme Prediction     

No EC number prediction in MGYG000003237_02081.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	650	940	5.9e-29	0.7238979118329466

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.35e-69	1120	1306	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
COG3693	XynA	2.74e-10	616	901	43	336	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam00331	Glyco_hydro_10	9.82e-08	606	732	9	128	Glycosyl hydrolase family 10.
cd09619	CBM9_like_4	1.99e-06	1144	1291	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	1.57e-05	1134	1287	1	157	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM47149.1	0.0	1	1307	1	1307
AVM46276.1	0.0	197	1307	27	1137
AVM44759.1	4.94e-200	350	1307	23	965
AHF94342.1	1.84e-157	481	1307	200	1033
AHF90198.1	2.10e-151	498	1306	199	1005

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	1.08e-20	611	1018	108	520	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.042822	0.944753	0.000966	0.010665	0.000435	0.000318

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003237_02081.