CAZyme Information: MGYG000003249_00585

Basic Information

• Species: Victivallis sp900761715
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp900761715
• CAZyme ID: MGYG000003249_00585
• CAZy Family: GH39
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1149	MGYG000003249_102|CGC2	128064.82	5.5699

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003249	2933905	MAG	United States	North America

• Gene Location: Start: 10857; End: 14306 Strand: -

Full Sequence      

MRSLQRFGTLLGAALTLTLAAEPLPWKFDASESWKSDRNLPVANTMNGLELAVPATPKWS
GEAVVYSLREPKSLAGVGAPKTITVNAELVSGGGATMALYLKDAEGEFFAYPQRPLKPGR
NQLIWEVERGHDGHWGDKQNGTVDFPVKLEALQLFQYPAEQPALVRLHGSGEAADGGRRP
VVRDFLAFDDTARWDIGRELTKTQLPGGLLIEAVRAPEPGKEPVIGRMREVFFDLKEIGS
PDAIALDVELQEGTGVNLALELIDAGGENFALRQQSLRPGRQQLLWDLRYDIAGSWGSRK
DGKIDLPVRISNVTYFQYPAEKPARVLFHRGLKREVLAPLDAVETVLETGNAMHVLKTGE
ESKLGFHLINHYPEIQRFDAAVRLYTLTGLERRSRHRVELKPGESTFLSIPWDAAAPRGI
WRSELELSNADGETSRRTRAAFAYLTPAGPNERQNPEFEIGLNLRQHGWSKRDCIIETET
AALIGAKLLRTGYTWEHMQPEKDRFDFAAMDELVALNARYGMRQLSLIAYTPIWAADPEL
VKNAKDWNEWNKSAPDPDALERFTEELTRHYRGKIEFFEFWNEPDLDFWRGTADDYLERQ
ARVYRALKRGNPDAKLICGGFAFTGNSRAKPGFQERVLAEGQQDFDFHGFHQHGDYSEYE
RAIEGPLTEMRKVLNPDKPIFFTETGFYVSNGNYLQQAANVIRKVIFARAIGARGYIWFD
LRDDGFLPGYCEHNYGLTTNDWFPKESFAAYNTLNLLLGDATFGGTLVRNARTTSYYFHR
NDGQVLSVWKNGRGMVEEPLTVLTDATSAVAVDLFGNETELPVAAGRVTVPVPAEPGFVV
LKDAKTAPTLGVGILGLAPGQERISGAPGGTAEVILVAVNPLGSEAKLQLEWRKTDGLKL
QNPVTVLTLKPQETAPLKIRLAIDRNVSGGLLRPELSYRLNDGTAQVMTLPVNVATRVAE
GKFTQEPQFILNSSANLVSQMEHNPYTAHRVWSGPADQSVRVYLAADQQELRIKVEVEDD
VHVKSAKAFTSYMEDGLQLALAIPGQKGHWEFGFAELADGQPDQCTWIHPDGFSEPENKL
TIRQQGTTTTYLISIPFRGIGLTAEQLRRGIQFNLLVNENDGEGRDGWMQISPGIGEAKN
PERYPFITL

Enzyme Prediction     

No EC number prediction in MGYG000003249_00585.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH39	464	783	7.7e-30	0.7517401392111369

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.51e-51	967	1149	1	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
COG3693	XynA	4.84e-07	495	684	69	257	Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
cd00241	DOMON_like	3.86e-06	992	1125	12	152	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
cd09619	CBM9_like_4	1.22e-05	991	1134	29	175	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
pfam01229	Glyco_hydro_39	2.76e-05	453	760	43	353	Glycosyl hydrolases family 39.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM45104.1	0.0	19	1147	8	1132
AVM47149.1	8.35e-139	83	1148	242	1305
AVM46276.1	2.85e-130	42	1147	37	1134
AHF90198.1	1.18e-116	257	1148	101	1004
AVM44759.1	2.52e-116	338	1148	155	963

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5JVK_A	4.80e-20	425	857	73	514	Structuralinsights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_B Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus],5JVK_C Structural insights into a family 39 glycoside hydrolase from the gut symbiont Bacteroides cellulosilyticus WH2. [Bacteroides cellulosilyticus]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.001025	0.997881	0.000378	0.000251	0.000226	0.000212

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003249_00585.