logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003259_01344

You are here: Home > Sequence: MGYG000003259_01344

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species HGM14224 sp900761905
Lineage Bacteria; Firmicutes_G; SHA-98; DTUO25; HGM14224; HGM14224; HGM14224 sp900761905
CAZyme ID MGYG000003259_01344
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
511 MGYG000003259_85|CGC1 54517.51 8.2548
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003259 2214959 MAG United States North America
Gene Location Start: 4658;  End: 6193  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003259_01344.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM50 133 176 6.9e-18 0.975
CBM50 297 340 1.1e-17 0.975
CBM50 243 286 1e-16 0.975
CBM50 189 232 2.6e-16 0.975
CBM50 22 65 9.4e-16 0.975

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK06347 PRK06347 2.65e-23 69 339 323 591
1,4-beta-N-acetylmuramoylhydrolase.
PRK06347 PRK06347 4.53e-17 125 393 325 591
1,4-beta-N-acetylmuramoylhydrolase.
smart00257 LysM 2.16e-15 132 175 1 44
Lysin motif.
cd00118 LysM 1.41e-14 132 175 2 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476 LysM 1.54e-14 133 176 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABW19482.1 2.27e-133 8 394 121 527
ATW24442.1 7.13e-130 10 394 3 402
QAT63505.1 1.94e-114 24 394 1 393
BAK98981.1 1.52e-87 18 395 9 494
QAT61792.1 6.85e-85 12 232 8 234

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4B8V_A 4.49e-17 133 287 44 218
ChainA, Extracellular Protein 6 [Fulvia fulva],4B9H_A Chain A, Extracellular Protein 6 [Fulvia fulva]
5K2L_A 8.47e-12 19 65 2 48
Crystalstructure of LysM domain from Volvox carteri chitinase [Volvox carteri f. nagariensis],5YZK_A Solution structure of LysM domain from a chitinase derived from Volvox carteri [Volvox carteri f. nagariensis]
5BUM_A 4.14e-11 132 175 5 48
CrystalStructure of LysM domain from Equisetum arvense chitinase A [Equisetum arvense],5BUM_B Crystal Structure of LysM domain from Equisetum arvense chitinase A [Equisetum arvense]
5YZ6_A 7.57e-11 19 65 2 48
Solutionstructure of LysM domain from a chitinase derived from Volvox carteri [Volvox carteri f. nagariensis]
4PXV_A 2.12e-08 133 175 5 47
CrystalStructure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_B Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_C Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],4PXV_D Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_A Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_B Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_C Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis],5YLG_D Crystal Structure of LysM domain from pteris ryukyuensis chitinase A [Pteris ryukyuensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P37710 1.32e-29 22 337 363 734
Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583) OX=226185 GN=EF_0799 PE=1 SV=2
O07532 1.36e-19 81 339 31 350
Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168) OX=224308 GN=lytF PE=1 SV=2
P39046 9.51e-19 79 389 257 660
Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 / JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO 1258 / NCTC 12367 / WDCM 00089 / R) OX=768486 GN=EHR_05900 PE=1 SV=1
O31852 6.96e-17 24 231 31 268
D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS OS=Bacillus subtilis (strain 168) OX=224308 GN=cwlS PE=1 SV=1
Q49UX4 2.46e-16 187 337 27 191
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=sle1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000067 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003259_01344.