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CAZyme Information: MGYG000003282_00223

You are here: Home > Sequence: MGYG000003282_00223

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coprobacter sp900545915
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Coprobacteraceae; Coprobacter; Coprobacter sp900545915
CAZyme ID MGYG000003282_00223
CAZy Family CBM32
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1101 MGYG000003282_3|CGC3 120705.27 4.9305
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003282 3080391 MAG United States North America
Gene Location Start: 94609;  End: 97914  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003282_00223.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM32 900 1016 9.2e-22 0.9032258064516129

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00754 F5_F8_type_C 5.56e-15 904 1015 10 127
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam12708 Pectate_lyase_3 7.16e-13 49 117 2 65
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
COG5434 Pgu1 3.92e-08 23 111 48 138
Polygalacturonase [Carbohydrate transport and metabolism].
pfam18962 Por_Secre_tail 2.21e-07 1039 1098 6 70
Secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
pfam12708 Pectate_lyase_3 3.48e-06 483 535 8 61
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AHW60575.1 0.0 38 1015 5 966
AEV98037.1 0.0 13 1017 20 1004
QUT90069.1 1.98e-307 32 1098 28 1117
QJD86468.1 8.33e-83 21 825 907 1711
QHW29527.1 1.39e-73 22 845 1058 1984

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7CHU_A 1.86e-08 48 106 74 132
ChainA, Putative pectin lyase [Geobacillus virus E2],7CHU_B Chain B, Putative pectin lyase [Geobacillus virus E2],7CHU_C Chain C, Putative pectin lyase [Geobacillus virus E2]
1GOF_A 1.92e-07 892 1017 9 145
NOVELTHIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],1GOG_A NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],1GOH_A NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE [Hypomyces rosellus],2EIE_A Chain A, Galactose oxidase [Fusarium graminearum],2JKX_A Chain A, GALACTOSE OXIDASE [Fusarium graminearum],2VZ1_A Chain A, GALACTOSE OXIDASE [Fusarium graminearum],2VZ3_A Chain A, Galactose Oxidase [Fusarium graminearum]
1T2X_A 1.92e-07 892 1017 9 145
Glactoseoxidase C383S mutant identified by directed evolution [Fusarium sp.]
2EIB_A 1.92e-07 892 1017 9 145
ChainA, Galactose oxidase [Fusarium graminearum]
2EIC_A 1.92e-07 892 1017 9 145
ChainA, Galactose oxidase [Fusarium graminearum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
I1S2N3 8.28e-07 892 1017 50 186
Galactose oxidase OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=GAOA PE=3 SV=1
P49426 8.84e-07 50 536 72 482
Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1
P0CS93 1.09e-06 892 1017 50 186
Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000970 0.892397 0.105771 0.000315 0.000271 0.000251

TMHMM  Annotations      download full data without filtering help

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